Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00123 ATGATGGAATCCGGGGCTCACATCTGCAACTCTTGTGGTGAACAAATTGGACTTGATGCTAATGGGGAGGTGTTTGTGGCTTGTCATGAGTGTTATTTTCCAATTTGCAAGGCTTGTTTTGAATATGAAATCAATGAGGGGCGTAAAGTCTGCTTGAGATGTGCCACTCCCTATGCTGATAGTGCAAAGGATAATGATGACACCAAGGTTCACGAAAATCAATCCACAACAGCTGCTCAGATCAGTGTTTCTCAGGATGTTGGGCTCCATGCTAGGCATGTCAGTACTGTGTCCACAGTGGATAGTGAATTAAATGATGAATCTGGGAATCCAATCTGGAAAAATAGAGTGGAAAGCTGGAAGGAAAAGGATAAAAGAAGAAGAAGAAGAAGAAGTCTGCACCTAAGGTCCTCAGAGGCTGCTGCTGCTGAACCACTTTCAATGGTTATTCCAATCTCAAAAACAAGACTCGCACCATACAGAACTGTGATAATCGTGCGACTGATAATCTTGGGTCTTTTCTTCCATTATCGAGTTACAAATCCTGTTGACAGTGCTTTTGCTCTGTGGTTGACATCCATCATATGTGAGATCTGGTTTGCATTTTCCTGGGTGTTAGATCAGTTCCCTAAATGGTCTCCTGTCAATAGGGAAGCTTTTATTGACACGCTTTCTGCAAGGTATGAAAGACCTGGTGAACCCTCTCAGCTTGCTGCTGTGGACTTCTTTGTCAGTACAGTCGATCCTCTGAAAGAACCGCCATTGATCACGGCTAATACAGTGCTTTCTATTCTTGCTGTGGACTATCCTGTGGATAAAGTATCCTGTTATGTGTCAGATGATGGTGCTGCAATGCTGACATTTGAGTCCCTTGTGGAGACAGCTGACTTTGCAAGAAAGTGGGTTCCATTTTGCAAAAAGTTTTCAATTGAACCACGCGCACCTGAGTTCTACTTCTCTCAGAAGATTGACTACCTGAAGGACAAAGTACAACCTTCTTTTGTGAAGGAACGTAGAGCAATGAAGAGAGACTATGAAGAGTTTAAAGTGCGAATTAATGCTTTGGTAGCAAAGGCTCAGAAAACACCAGATGAAGGATGGACTATGCAAGATGGAACCGCATGGCCAGGAAATAACTCACGTGATCACCCTGGCATGATTCAGGTTTTCCTTGGACACAGTGGTGCCCATGACATAGAGGGAAATGAACTTCCCAGGTTGGTGTATGTTTCCAGAGAGAAAAGGCCAGGTTACCAACACCACAAAAAGGCTGGTGCTGAAAATGCATTGGTGAGGGTGTCTGCAGTACTCACAAATGCTCCCTTCATTCTCAATCTTGACTGTGATCATTATGTGAACAATAGCAAGGCTGTACGGGAAGCAATGTGTTTTCTGATGGATCCAGTAGTTGGCAGAGATTTGTGTTATGTGCAGTTTCCCCAGAGATTTGATGGTATCGATCGTAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTTAACATGAAAGGACTTGATGGCATTCAAGGACCTATGTATGTGGGAACTGGATGTGTTTTCAATAGACAAGCACTTTATGGCTACAGCCCACCTTCTATGCCCAAATTACCAAAATCATCATCCTGCTGTTGCTGCCCCTCAAAGAAGCAAACCAAAGATGTCTCAGAGCTTTATAGAGATGCAAAGAGGGAAGAACTTGATGCTGCCATTTTTAATCTCAGGGAGATTGACAGTAAGCACGCTAACTATGATGAATATGAGAGGTCAATGCTGATTTCACAAATGAGCTTTGAGAAAACATTTGGTTTGTCCACTGTTTTCATTGAGTCTACTCTAATGGAGAATGGAGGGCTTCCTGAATCTGCTGATCCCTCAATGCTGATCAAAGAGGCCATTCATGTTATTAGCTGTGGATATGAAGAGAAGACTGCATGGGGAAAAGAGATTGGATGGATCTATGGTTCAGTTACTGAGGATATCTTAACGGGGTTCAAGATGCAATGCCGGGGATGGAGGTCAGTTTACTGCATGCCCTTAAGGCCTGCATTCAAAGGATCAGCACCAATCAATCTTTCTGATCGTTTGCACCAAGTTCTTCGATGGGCCCTTGGATCAGTTGAAATTTTCTTTAGCAGACATTGCCCCCTCTGGTATGGCTTTGCAGGAGGTCGCCTCAAATGGCTGCAAAGACTGGCTTACATAAACACCATTGTCTACCCATTTACATCCCTTCCTCTCGTTGCTTATTGTACTTTGCCTGCAATTTGCCTTCTCACAGGAAAATTCATCATACCAACGCTTTCGAACCTTGCAAGTGCCCTCTTTCTTGGACTTTTCCTTTCCATTATAATCACTAGTGTGCTTGAGCTGCGGTGGAGTGGTGTGACCATTGAAGCTCTATGGCGTAATGAGCAGTTCTGGGTTATTGGAGGAGTTTCAGCCCATCTATTTGCTGTGTTCCAAGGATTCCTCAAGATGTTGGCTGGTGTTGACACCAACTTCACTGTCACTACCAAAGCTGCTGATGACACTGAGTTTGGTGAACTATATATCATCAAGTGGACCACACTCTTAATTCCTCCAACAACCCTTATCATTATTAACATGGTTGGTGTTGTGGCTGGATTTTCTGATGCACTCAATGGAGGATATGAGTCTTGGGGACCACTTTTTGGAAAGGTTTTCTTTGCCTTCTGGGTCATTTTCCATCTCTACCCATTCCTCAAGGGTCTCATGGGTCGCCAAAACCGCACTCCAACCATTGTTATTCTGTGGTCAGTGCTGTTGGCCTCTGTCTTCTCTCTGGTTTGGGTCAAGATTAACCCTTTTATCAGCAGACCTGACAGTGCAAGCATTTCCCAGACCTGCATTTCTATAGATTGCTAA 2892 0.4381 MMESGAHICNSCGEQIGLDANGEVFVACHECYFPICKACFEYEINEGRKVCLRCATPYADSAKDNDDTKVHENQSTTAAQISVSQDVGLHARHVSTVSTVDSELNDESGNPIWKNRVESWKEKDKRRRRRRSLHLRSSEAAAAEPLSMVIPISKTRLAPYRTVIIVRLIILGLFFHYRVTNPVDSAFALWLTSIICEIWFAFSWVLDQFPKWSPVNREAFIDTLSARYERPGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEFKVRINALVAKAQKTPDEGWTMQDGTAWPGNNSRDHPGMIQVFLGHSGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPVVGRDLCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPMYVGTGCVFNRQALYGYSPPSMPKLPKSSSCCCCPSKKQTKDVSELYRDAKREELDAAIFNLREIDSKHANYDEYERSMLISQMSFEKTFGLSTVFIESTLMENGGLPESADPSMLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMQCRGWRSVYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGFAGGRLKWLQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASALFLGLFLSIIITSVLELRWSGVTIEALWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTTKAADDTEFGELYIIKWTTLLIPPTTLIIINMVGVVAGFSDALNGGYESWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVILWSVLLASVFSLVWVKINPFISRPDSASISQTCISIDC 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00123 963 Pfam Zinc-binding RING-finger 4 60 IPR027934 -
Pumo10g00123 963 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Pumo10g00123 963 SUPERFAMILY Nucleotide-diphospho-sugar transferases 254 756 IPR029044 -
Pumo10g00123 963 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 389 531 IPR029044 -
Pumo10g00123 963 FunFam Cellulose synthase 357 531 - -
Pumo10g00123 963 CDD mRING-HC-C4C4_CesA 7 57 - -
Pumo10g00123 963 SUPERFAMILY RING/U-box 2 64 - -
Pumo10g00123 963 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 144 928 - -
Pumo10g00123 963 FunFam Cellulose synthase 1 82 - -
Pumo10g00123 963 Pfam Cellulose synthase 240 954 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00123 Pumo-Chr10 1918176 1923942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00123 1 963 Glycosyltransferase AT4G18780 80.384 0.0 1650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00123 K10999 - gmx:100806522 1854.34