Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00101 ATGGGTAGCGTTACCACACCTCTTCTCAGATGCTGCAGACCATTTTTCTCTATGGTTTTCCCTCGCTCAGCTCCACCCAGACCCCACGCCGCCATCTTCAGGAGCAAATCCGTCGGCGAGGGTCTCTCCTCGAAGAACCCCTCGCCGGAGTTGTGGCTGCACAACACCATGAGTAAAACGAAGCAGCTCTTCAAACCCAAAGTGGAATCCAAAGTGGGAATGTACGTGTGCGGAGTCACCGCTTACGATCTCAGCCATATTGGACATGCTCGCGTATACGTCAATTTCGACCTTCTTTACAGATACTTTAAGCATTTGGGATTTGAAGTCTGTTATGTTCGCAATTTTACTGACGTAGATGACAAGATAATTGCTAGAGCAAATGAGTTAGGAGAAGATCCAATCAGTTTGAGCCGGCGCTATTGTGAAGAGTTCTGTCAAGACATGGTAACTCTTAATTGTCTGTCTCCCTCTGTGGAACCAAAGGTCTCAGAGCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAATAATGGGTATGCCTACGTTGTTGATGGGGATGTATACTTTAATGTAGAAAATTTTCCAGAATATGGAAAACTATCTAGTCGAGATCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCAGTCGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCGGGGGAGCCATTTTGGGAGAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCCATGAGTGCAGCTTATCTTGGTTACTCTTTTGATATCCATGGTGGAGGAATCGACCTTGTGTTTCCTCACCATGAGAATGAAATTGCTCAGAGTTGTGCTGCATGTAAGAAAAGTGATATAAGCGTATGGATGCACAATGGTTTTGTCACCGTTGACTCTGTGAAGATGTCAAAATCTTTGGGAAATTTTTTCACAATACGTCAGGTTATAGACGTTTACCATCCACTGGCTTTGAGATATTTTTTGATGAGCGCACATTATCGATCTCCTATTAACTACTCAAATATACAGCTCGAAAGTGCTTCAGACCGTGTTTTTTATATATATGAGACATTACATGAATGTGAAAGCTTTTTGAATCAGCATGATCAGACAAGTAGGAAGGATTCCATCCCACCGGATACTTTGGATATTATTGATAAGTTCCATGATGTTTTTTTGACCTCAATGTCGGATGATCTTCACACTCCAGTTGTATTGGCTGGAATGTCTGATCCATTAAAATCAATCAATGATTTGCTGCATACCCGTAAGGGGAAAAAACAACAATTTCGAATCAAATCACTTTCAGCTTTGGAGAAGAGCATCAGGGATGTCCTTATTGTTTTAGGACTTATGCCTGCAAGTTACTCTGAGGTTTTGCAGCAGCTTAAGGAAAAAGCTTTAAAGCGTGCAAACTTGACAGAAGACGAAGTCTTGCAGAAAATTGAAGAACGGGCTGCTGCTAGAATACAAAAGGAGTATGCTAAATCGGATGCAATAAGGAAGGATTTGGCTGTTGTTGGTATTACTCTTATGGACAGTCCAAATGGCACAACTTGGAGGCCTGCCATTCCTCTCCCACTTCAAGAGCTGCTCTAG 1638 0.4286 MGSVTTPLLRCCRPFFSMVFPRSAPPRPHAAIFRSKSVGEGLSSKNPSPELWLHNTMSKTKQLFKPKVESKVGMYVCGVTAYDLSHIGHARVYVNFDLLYRYFKHLGFEVCYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFCQDMVTLNCLSPSVEPKVSEHMPQIIDMIEKILNNGYAYVVDGDVYFNVENFPEYGKLSSRDLEDNRAGERVAVDSRKKNPADFALWKSAKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISVWMHNGFVTVDSVKMSKSLGNFFTIRQVIDVYHPLALRYFLMSAHYRSPINYSNIQLESASDRVFYIYETLHECESFLNQHDQTSRKDSIPPDTLDIIDKFHDVFLTSMSDDLHTPVVLAGMSDPLKSINDLLHTRKGKKQQFRIKSLSALEKSIRDVLIVLGLMPASYSEVLQQLKEKALKRANLTEDEVLQKIEERAAARIQKEYAKSDAIRKDLAVVGITLMDSPNGTTWRPAIPLPLQELL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00101 545 SUPERFAMILY Nucleotidylyl transferase 50 357 - -
Pumo10g00101 545 Hamap Cysteine--tRNA ligase [cysS]. 51 536 IPR015803 GO:0004817|GO:0005524|GO:0006423
Pumo10g00101 545 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 391 534 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pumo10g00101 545 Pfam tRNA synthetases class I (C) catalytic domain 64 360 IPR032678 -
Pumo10g00101 545 CDD CysRS_core 52 353 IPR032678 -
Pumo10g00101 545 PANTHER CYSTEINYL-TRNA SYNTHETASE 47 539 IPR024909 -
Pumo10g00101 545 NCBIfam cysteine--tRNA ligase 52 534 IPR015803 GO:0004817|GO:0005524|GO:0006423
Pumo10g00101 545 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 353 535 - -
Pumo10g00101 545 Gene3D HUPs 33 353 IPR014729 -
Pumo10g00101 545 PRINTS Cysteinyl-tRNA synthetase signature 270 291 IPR024909 -
Pumo10g00101 545 PRINTS Cysteinyl-tRNA synthetase signature 74 85 IPR024909 -
Pumo10g00101 545 PRINTS Cysteinyl-tRNA synthetase signature 239 257 IPR024909 -
Pumo10g00101 545 PRINTS Cysteinyl-tRNA synthetase signature 110 119 IPR024909 -
Pumo10g00101 545 FunFam Cysteine--tRNA ligase 50 351 - -
Pumo10g00101 545 Gene3D - 354 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00101 Pumo-Chr10 1691671 1696394 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00101 K01883 - gmx:100786700 1032.71