Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00085 ATGGCTCCGACGACGATCCGGAAGGCGATTGGGGTGGTGAAGGACCAGACCAGCATAGGGATAGCGAAGGTTGCGAGCAACATGGCGCCGGAGATGGAGGTTGCGATTGTGAAGGCCACGAGCCACGACGACGACCCTGCCAGCGAGAAGTACATAAGGGAGATCTTGAACCTCATGTCTCACTCGCGCGGTTACGTCCACGCGTGTGTCTCTGCGGTGTCCAAGCGTTTGGGGAAGACGCGCGACTGGATTGTGGCGCTCAAAGCGCTGATGCTGGTGCACAGGCTGATGAACGAGGGTCCGCCGCTGTTCCAGGAGGAGATCCTGTACGCCACCCGCAGGGGAACCAGGCTTCTCAATATGTCTGATTTCAGAGACGAGGCTCACTCTAGCTCCTGGGATCACTCCGCTTTTGTGAGGACCTATGCTATGTATCTCGATCAGAGGCTTGAGTTGACGCTCTTTGATAGAAAGAGCACCGCCAATGGTGGCGGTAGTGTTGGCGGTGGCGGTGATGATAGGTTTGGTGGAAGAGAGTCAAGAGACAATTTCCGGTCACCGCCGTATGAGTACGGCGGCGGTGAATTTAGAGGGGAAGGCGGTTATGGATCATATGGGAATGGGATGAGGAAGACGAGATCGTATGGGGACATGACTGAATCGGTGGGGAGGGGGGAAGATAAGGCGGTTGTGAGTGTGACTCCTCTGAGGGATATGACGCCGGAGAGGGTTTTCGGGAAGATGGGTCATTTGCAGAGGTTGTTGGATCGGTTCTTGGCTTGTAGGCCTACTGGGTTGGCGAAGAATAGTAGGATGGTTTTGATTGCGTTGTATCCGGTTGTCAAGGAGAGTTTTCAGTTGTATGCTGATATATGTGAGGTTTTGGCTGTGTTGCTTGACAAGTTCTTTGATATGGAGTATGCTGATTGTGTAAAGGCCTTTGATGCTTATGCTAGTGCAGCTAAGCAGATTGATGAGTTGGTTGCTTTTTACAATTGGTGTAAGGATACTGGCGTGGCGAGGTCCTCGGAGTACCCTGAGGTTCAGAAGATCACCAGCAAGTTGCTGGAGACGTTGGAGGAGTTTGTGAGGGATAGGGCTAAGAGGCCAAAGAGTCCGGAGAGGAAAGAGGAGGCTCTGCCAGTGGAGAAGGTAGAGGAGGAGCCGGCACCGGATATGAATGAAATCAAGGCACTGCCTCCACCGGAGAATTATAGCCCACCTCCTCCGCCTGAGCCGGAGCCTAAGCCACAACAACCACAGGTTACGGAGGACTTGGTGAATCTGAGAGATGATGCAGTTTCTGCGGATGATCAGGGAAATAGATTGGCTTTGGCACTCTTTGCTGGTGCACCTGCTAATAATGCAAATGGATCATGGGAAGCCTTCCCATCCAATGGACAGCCAGAAGTGACTTCAGCCTGGCAAACCCCAGCCGCAGAGCCCGGGAAAGCCGATTGGGAATTGGCATTGGTAGAGACTGCTAGCAATTTGTCAAAGCAGAAGGCAGCTTTAGGTGGTGGGTTTGATCCTCTATTGTTGACTGGCATGTATGATCAAGGAATGGTTAGGCAGCATGTCAGCACTACCCAACTGAGTGGAGGGAGTGCAAGCAGTGTGGCGTTGCCAGGACCAGGAAAGACTACAACCCCTGTTTTGGCTCTCCCCGCCCCAGATGGATCTGTGCAGCCAGTTAATCAGGATCCATTTGCTGCGTCGTTGAGCATTCCACCACCATCCTATGTGCAAATGGCTGACATGGAGAAGAAGCAGCATTTGCTCGTGCAGGAGCAGCAGGTGTGGCATCAGTATGCAAGGGATGGGATGCAAGGCCAATCTAGCTTGGCCAAACTGAGTGGCACTGGATACTATGCTGGAGGTCCTATGCCCACGATGCCTTATGGAATGCCCCCAGTCAATGGAATGGGACCTCCAACCGGGTATTATCACACTCCTTACTGA 1962 0.5291 MAPTTIRKAIGVVKDQTSIGIAKVASNMAPEMEVAIVKATSHDDDPASEKYIREILNLMSHSRGYVHACVSAVSKRLGKTRDWIVALKALMLVHRLMNEGPPLFQEEILYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYAMYLDQRLELTLFDRKSTANGGGSVGGGGDDRFGGRESRDNFRSPPYEYGGGEFRGEGGYGSYGNGMRKTRSYGDMTESVGRGEDKAVVSVTPLRDMTPERVFGKMGHLQRLLDRFLACRPTGLAKNSRMVLIALYPVVKESFQLYADICEVLAVLLDKFFDMEYADCVKAFDAYASAAKQIDELVAFYNWCKDTGVARSSEYPEVQKITSKLLETLEEFVRDRAKRPKSPERKEEALPVEKVEEEPAPDMNEIKALPPPENYSPPPPPEPEPKPQQPQVTEDLVNLRDDAVSADDQGNRLALALFAGAPANNANGSWEAFPSNGQPEVTSAWQTPAAEPGKADWELALVETASNLSKQKAALGGGFDPLLLTGMYDQGMVRQHVSTTQLSGGSASSVALPGPGKTTTPVLALPAPDGSVQPVNQDPFAASLSIPPPSYVQMADMEKKQHLLVQEQQVWHQYARDGMQGQSSLAKLSGTGYYAGGPMPTMPYGMPPVNGMGPPTGYYHTPY 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00085 653 FunFam putative clathrin assembly protein At2g25430 230 375 - -
Pumo10g00085 653 Pfam ANTH domain 32 365 IPR011417 GO:0005543
Pumo10g00085 653 MobiDBLite consensus disorder prediction 364 393 - -
Pumo10g00085 653 CDD ANTH_N_AP180_plant 33 152 - -
Pumo10g00085 653 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Pumo10g00085 653 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 596 IPR045192 GO:0048268|GO:0072583
Pumo10g00085 653 MobiDBLite consensus disorder prediction 401 418 - -
Pumo10g00085 653 MobiDBLite consensus disorder prediction 364 422 - -
Pumo10g00085 653 SUPERFAMILY GAT-like domain 235 365 - -
Pumo10g00085 653 SMART enth_2 30 160 IPR013809 -
Pumo10g00085 653 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Pumo10g00085 653 Gene3D ANTH domain 229 377 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Pumo10g00085 653 MobiDBLite consensus disorder prediction 161 190 - -
Pumo10g00085 653 FunFam Clathrin coat assembly protein 3 156 - -
Pumo10g00085 653 Gene3D - 2 156 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00085 Pumo-Chr10 1536269 1539527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00085 - - gmx:100803282 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00085 10 1536269 1539527 Pumo10g00085 10 1536269 1539527 ECH