Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00078 ATGTCTAAAGTTTTCAGCTTTACCGGAAATGATGATTTTTATGCTGGGGGTCCTATATATCCTAACCCCAAGGAACCATGTCTCTTCTTGTCTCTTGGTCGTCAAGTTGATGTTTACCGTCCTCTTCAGAAGAGGTCTCGCTTCAGTGTTCCATTTGATATCAGTGGAGAATGGTTTGAGCAGAAGCAGAAGCAGAAGCAAAAGACATCTATTGAATCTTTGCCAGATGAATGTCTATTTGAGATCCTTAGAAGGTTGCCTGCAGGCCAAGATAGGAGTGTCTGTGCTTCTGTAACCAAGCGCTGGCTTATGCTTCTAAGCAGTATATGTAAGAATGAAATCTGCAGCAATGGAAGTACCAAAAATGAAAGCGAGGGTGATGATCAGGAATTTAGTGATGAAGGTTACCTATCCCGAAGCTTGGAGGGAAAGAAGGCAACAGATGTTAGACTTGCTGCCATTGCCGTTGGGACAGCTTCTCGAGGAGGGTTGGGGAAGCTGACAATTCGCGGAAGCAATTCAGATCATGGGGTGACTAATGTAGGTCTCAAGGCAATTGCTCATGGATGCCCTTCTCTAAAGGTTTTCTCTATATTGGATGTCGCTACTGTTGATGATGAAGGCCTGATTGAGATTGCTAGCGGGTGTCATCAGTTAGAGAAGATTGACCTATGCAAGTGCCCTAATATTTCTGACAAGACTTTAATTGCAGTCGCAAAGAACTGTCCAAATCTGACTGAGCTTTCAGTAGAGTCATGTCCTAACATTGGTAATGAAGGTCTACAAGCTATTGGGAAGTGGTGTCCCAATCTAAGGTCTATCTCGATCAAGGATTGTTCCGGAGTTGGTGATCAGGGAATCGCTGGCCTCTTGTCTTCAGCTTCTTTTGTTCTAACAAAGGTGAAGCTTGAGTCGCTGACTGTTTCTGATCTCTCTCTAGCAGTGATTGGGCATTATGGCGTTGCAGTTACCGATCTTGTTCTAAGTTGCCTCCCACATGTCAGTGAGAAAGGGTTCTGGGTTATGGGTAATGGCCGTGGACTGCAGAAACTAACTTCAATCACAATCGATTGCTGCCAAGGAGTAACAGATGTTGGTATTGAAGCTATTGGAAAGGGTTGTCCAAATGTGCAAAACTTCCAGCTTCGTAAGTGTGCTTTTCTGTCAGACAAGGGGTTGGTATCATTTGCAAGGGCTGCTCCATCAATTGAGAGCCTACAATTGCAAGAGTGCCACAGAATTACCCAAATTGGGCTTTTTGGTGTCTTTTTTAACTGTGGTGCAAAATTGAAGGTTCTTACTCTGATTAGCTGCTATGGGATCAAAGATCTGAATATGGAATTGCCAGCGATATCTCCTTCTGAATCAATGTGGTCATTAAAAATCTGTGACTGCCCTGGATTTGGCAATGCTAACCTTGCTCTACTTGGAAAGCTGTGTCCTCGGCTTCAGCATGTTGAATTGAGTGGACTTCAGGGAGTAACAGACACAGGGTTTCTTCCACTGCTGGAGAGTTCTGAGGCTGGTCTGGTTAAAGTTAATCTAAGTGGTTGCGTAAATGTGACGAACAGAGTAGTTTTGTCCATGGTCAACTCACATGGATGGACTCTTGAGGTGCTAAGCCTTAATGGTTGTAAAATGGTTGGTGATGCTAGCTTGATGGCAATTGCAGGCAATTGCCCATTGCTCTCTGATCTCGATGTTTCCAGGTGTGCAATCACTGATGCCGGTATTGCTGCCCTTGCACGTGGAAAGCAGCTCAACTTGGAGGTACTTTCTTTGGCAGGTTGCACATTCGTTTCAGACAAGAGCGTGCCCACATTGAAAAAATTGGGCCAGTCCCTTGTGGGATTAAACATCAAGCGTTGCAACGCAATCAGCCGCCGCTCTGTCGACAAGCTTCTGGAACATCTCCTGATGTGTGACATCCTCTACTGA 1938 0.4489 MSKVFSFTGNDDFYAGGPIYPNPKEPCLFLSLGRQVDVYRPLQKRSRFSVPFDISGEWFEQKQKQKQKTSIESLPDECLFEILRRLPAGQDRSVCASVTKRWLMLLSSICKNEICSNGSTKNESEGDDQEFSDEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLTIRGSNSDHGVTNVGLKAIAHGCPSLKVFSILDVATVDDEGLIEIASGCHQLEKIDLCKCPNISDKTLIAVAKNCPNLTELSVESCPNIGNEGLQAIGKWCPNLRSISIKDCSGVGDQGIAGLLSSASFVLTKVKLESLTVSDLSLAVIGHYGVAVTDLVLSCLPHVSEKGFWVMGNGRGLQKLTSITIDCCQGVTDVGIEAIGKGCPNVQNFQLRKCAFLSDKGLVSFARAAPSIESLQLQECHRITQIGLFGVFFNCGAKLKVLTLISCYGIKDLNMELPAISPSESMWSLKICDCPGFGNANLALLGKLCPRLQHVELSGLQGVTDTGFLPLLESSEAGLVKVNLSGCVNVTNRVVLSMVNSHGWTLEVLSLNGCKMVGDASLMAIAGNCPLLSDLDVSRCAITDAGIAALARGKQLNLEVLSLAGCTFVSDKSVPTLKKLGQSLVGLNIKRCNAISRRSVDKLLEHLLMCDILY 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00078 645 SUPERFAMILY F-box domain 65 108 IPR036047 GO:0005515
Pumo10g00078 645 SMART LRR_CC_2 190 215 IPR006553 -
Pumo10g00078 645 SMART LRR_CC_2 400 425 IPR006553 -
Pumo10g00078 645 SMART LRR_CC_2 480 505 IPR006553 -
Pumo10g00078 645 SMART LRR_CC_2 586 611 IPR006553 -
Pumo10g00078 645 SMART LRR_CC_2 348 373 IPR006553 -
Pumo10g00078 645 SMART LRR_CC_2 242 267 IPR006553 -
Pumo10g00078 645 SMART LRR_CC_2 534 559 IPR006553 -
Pumo10g00078 645 SMART LRR_CC_2 612 637 IPR006553 -
Pumo10g00078 645 SMART LRR_CC_2 560 584 IPR006553 -
Pumo10g00078 645 SMART LRR_CC_2 216 241 IPR006553 -
Pumo10g00078 645 SMART LRR_CC_2 268 293 IPR006553 -
Pumo10g00078 645 SMART LRR_CC_2 374 399 IPR006553 -
Pumo10g00078 645 SMART LRR_CC_2 507 532 IPR006553 -
Pumo10g00078 645 SMART fbox_2 74 115 IPR001810 GO:0005515
Pumo10g00078 645 FunFam EIN3-binding F-box protein 1 371 452 - -
Pumo10g00078 645 Pfam Leucine Rich repeat 241 264 IPR001611 GO:0005515
Pumo10g00078 645 Pfam Leucine Rich repeat 536 557 IPR001611 GO:0005515
Pumo10g00078 645 Pfam Leucine Rich repeat 560 582 IPR001611 GO:0005515
Pumo10g00078 645 SUPERFAMILY RNI-like 176 421 - -
Pumo10g00078 645 Pfam F-box domain 72 110 IPR001810 GO:0005515
Pumo10g00078 645 Gene3D Ribonuclease Inhibitor 137 241 IPR032675 -
Pumo10g00078 645 Gene3D Ribonuclease Inhibitor 455 586 IPR032675 -
Pumo10g00078 645 FunFam EIN3-binding F-box protein 1 64 113 - -
Pumo10g00078 645 SUPERFAMILY RNI-like 374 634 - -
Pumo10g00078 645 Gene3D - 63 113 - -
Pumo10g00078 645 Gene3D Ribonuclease Inhibitor 587 644 IPR032675 -
Pumo10g00078 645 FunFam EIN3-binding F-box protein 1 138 364 - -
Pumo10g00078 645 PANTHER UNCHARACTERIZED 459 634 - -
Pumo10g00078 645 FunFam EIN3-binding F-box protein 1 506 643 - -
Pumo10g00078 645 Gene3D Ribonuclease Inhibitor 242 454 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00078 Pumo-Chr10 1456368 1459313 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00078 K14515 - gmx:100805418 1133.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00078 10 1456368 1459313 Pumo10g00078 10 1456368 1459313 ECH