Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00054 ATGTTGACGCTGGAAGAGTCGCTCTCGCAGCCCCAAACTAGAAACCCTTCCACTATAAAAGCCTCGCTTCTTCCAACACTCTCAAGCCCCATCACTCCAACGCCTCAAAACGACACAGTTCTACTCTCCGCTCTAAACCCTCTGCCTCTCTCTTTCTCGATCATGGCTTTGCCCAATCAGCAAACCGTCGATTACCCAAGCTTCAAGCTCGTCATCGTCGGTGACGGTGGCACAGGAAAGACAACCTTCGTGAAAAGGCATCTCACTGGTGAATTCGAGAAGAAATATGAACCGACCATTGGTGTGGAGGTTCATCCGTTGGATTTTTTTACAAACTGTGGAAAGATTCGCTTCTATTGTTGGGATACTGCTGGGCAAGAGAAGTTTGGTGGTCTCAGAGATGGATATTATATCCACGGGCAATGTGCGATTATCATGTTTGATGTTACTGCCCGGCTAACATACAAAAATGTCCCTACCTGGCACCGTGATCTTTGTCGGGTCTGTGAAAACATCCCAATTGTTCTTTGCGGTAACAAGGTTGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTTACATTCCACAGGAAGAAGAACTTGCAGTACTATGAGATATCAGCTAAGAGCAACTATAACTTTGAAAAGCCATTCTTGTATTTGGCCAGGAAACTTGCAGGCGATCCTAACTTGCACTTTGTAGAATCTCCTGCATTGGCTCCACCAGAAGTTCAAATTGATATAGCTGCACAACAACAGCATGAGGCTGAGCTTGCTGCAGCTGCTAGTCAGCCCCTTCCTGACGACGATGATGATGCATTTGAGTAG 828 0.465 MLTLEESLSQPQTRNPSTIKASLLPTLSSPITPTPQNDTVLLSALNPLPLSFSIMALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDIAAQQQHEAELAAAASQPLPDDDDDAFE 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00054 275 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 184 202 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pumo10g00054 275 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 81 95 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pumo10g00054 275 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 222 244 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pumo10g00054 275 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 148 169 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pumo10g00054 275 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 128 146 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pumo10g00054 275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 248 IPR027417 -
Pumo10g00054 275 ProSiteProfiles small GTPase Rab1 family profile. 62 275 - -
Pumo10g00054 275 Gene3D - 57 273 IPR027417 -
Pumo10g00054 275 SMART rho_sub_3 70 224 IPR001806 GO:0003924|GO:0005525
Pumo10g00054 275 PANTHER RAN GTPASE 55 273 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pumo10g00054 275 FunFam GTP-binding nuclear protein 59 273 - -
Pumo10g00054 275 MobiDBLite consensus disorder prediction 255 275 - -
Pumo10g00054 275 SMART ras_sub_4 65 228 - -
Pumo10g00054 275 MobiDBLite consensus disorder prediction 1 21 - -
Pumo10g00054 275 SMART ran_sub_2 73 274 - -
Pumo10g00054 275 ProSiteProfiles small GTPase Ran family profile. 61 225 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pumo10g00054 275 Pfam Ras family 69 225 IPR001806 GO:0003924|GO:0005525
Pumo10g00054 275 NCBIfam small GTP-binding protein domain 68 218 IPR005225 GO:0005525
Pumo10g00054 275 SMART rab_sub_5 68 228 - -
Pumo10g00054 275 ProSiteProfiles small GTPase Ras family profile. 59 259 IPR001806 GO:0003924|GO:0005525
Pumo10g00054 275 CDD Ran 68 233 IPR002041 GO:0003924|GO:0005525|GO:0006913
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00054 Pumo-Chr10 1175008 1189376 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00054 K07936 - han:110891518 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00054 10 1175008 1189376 Pumo10g00054 10 1175008 1189376 ECH