Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00050 ATGGCTGCTACTACTCCTTCATCTACATACCCTTTTGGAACCCCTTTCCACTCCCACGCTCGAAGAGTGGATTGCTCATCCTCCATGTTCCCCCTTCATGCAGACCTCTCTACAATTTCTATGTGCCCGCGTTCTGCTTCAAAGGGATTAGTTGATCGAGTATATGCACAACTTGATAGTGATGATTACTACTGGGAGAAAGTTCCAACACCCATTCTTGACATGGTTGAAAACCCTCTTTGCTTGAAGAACTTATCTCTTAAGGAACTGAAACAACTAGCAGTTGAAATCCGTTCAGATTTGACTTCTATTATGTCAGGTACGCATATATCTCCAAAAGCAAGTATGGCAGTGGTGGAGCTGACAGTTGCAATACATCATGTTTTCAATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACAGGAAGGCGATCACTCATGACGACAATGAGAAGAAAGAATGGTCTTTCTGGTTTTACTTCCCGATTTGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAACAGTATTTCTGCTGGACTTGGCATGGCAGTTGCGCGGGATATTAAGGGGAGGCGAGAACGCGTAGTTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGCGTATGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTTGTGATTTTGAATGATAGCCGTCACTCTTTACTTCCAAAAATTGAGGAGGGCCCAAAGACATCTGTCAATGCCCTATCTAGTACCCTGAGCAAGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGGTGTTACGAAACGAATTGGTAGAAGTATGCATGAGTTGGCAGCTAAAGTTGATGAATATGCTCGTGGTATGATGGGTCCTCTAGGTTCTACTCTTTTTGAAGAGCTTGGGTTGTACTACATAGGCCCAGTGGATGGACACAATATTGAAGATCTCATATGTGTTCTGCAAGAAGTAGCTTCCCTGGATTCAATGGGACCTGTCTTGGTACATGTGATAACTGATGAAAATCAGGGAGATGAAAACAGTCAGAAAAGTGATATATCAGACAAGCAGCAGGATGATGATTCTGTTAAATCTGATTTGTTAGATAATGCTGTTCGGCCTCAAACATATGGCGATTGCTTTGTGGAGACTTTGGTTGCAGAAGCAGAGAAAGACAAAGATATTGTCGTTGTTCATGCTGGAATAATGATGGAGGCATCACTTGAACTGTTTCGGGAAAAATTTCCAGATAGGTTTTTTGATGTGGGAATGGCTGAGCAACATGCAGTCACATTTGCTTCTGGTTTGGCATGTGGTGGATTGAAGCCATTTTGTATCATACCTTCATCCTTTCTACAAAGAGCCTATGACCAGGTGGTACATGATGTTGATCAACAGAGAATTCCAGTGCGTTTTGTTATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTTCAATGTGGAGCATTTGATATAAACTTTATGTCATGCTTACCAAACATGATTGTAATGGCGCCATCTGATGAGGTTGAACTCATGCACATGGTGGCTACTGCTACTTGTATCAATAATCAGCCAATCTGCTTTCGGTATCCAAGGGGTGCCCTGGTTGGGAAAGGCTACACTATAGGCGATGGAATCCCCATCGAGATAGGAAGAGGAAGAGTTCTTGTTGAAGGTAAAGATGTTACTTTCCTAGGATATGGATCGATGGTTCAGAACTGCCTAAAGGCTCATTCACTCCTTGCAAAGCTTGGCATTGAGGTCACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATTAAGCTTCTGAGGCAGCTTTGTAAACATCACTCTTTTCTAATAACTGTTGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCCCAGTTTATTGCAGTTAATGGACTACTCGATGGAAGAATTAAGTGGCGACCAATTGTTTTACCAGACAGATATATTGAGCATGCATCACCAAATGAACAGGTTGACGAAGCGGGGTTGAGTGGACATCACATTGCTGCCACGGCATTGAGTTTACTAGGCCGTACCCGTGAAGCTCTCTTGTTTATGTGTTCGTGA 2145 0.4317 MAATTPSSTYPFGTPFHSHARRVDCSSSMFPLHADLSTISMCPRSASKGLVDRVYAQLDSDDYYWEKVPTPILDMVENPLCLKNLSLKELKQLAVEIRSDLTSIMSGTHISPKASMAVVELTVAIHHVFNAPVDKILWDVGDQTYAHKILTGRRSLMTTMRRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRRERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGPKTSVNALSSTLSKLQSSKSFRRFREAAKGVTKRIGRSMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLVHVITDENQGDENSQKSDISDKQQDDDSVKSDLLDNAVRPQTYGDCFVETLVAEAEKDKDIVVVHAGIMMEASLELFREKFPDRFFDVGMAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDINFMSCLPNMIVMAPSDEVELMHMVATATCINNQPICFRYPRGALVGKGYTIGDGIPIEIGRGRVLVEGKDVTFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQVDEAGLSGHHIAATALSLLGRTREALLFMCS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00050 714 CDD TPP_DXS 107 362 IPR005477 GO:0008661|GO:0016114
Pumo10g00050 714 Gene3D - 65 364 - -
Pumo10g00050 714 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 571 703 - -
Pumo10g00050 714 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 75 700 IPR005477 GO:0008661|GO:0016114
Pumo10g00050 714 CDD TPP_PYR_DXS_TK_like 399 552 - -
Pumo10g00050 714 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 72 703 IPR005477 GO:0008661|GO:0016114
Pumo10g00050 714 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 70 455 IPR029061 -
Pumo10g00050 714 SMART Transket_pyr_3 393 558 IPR005475 -
Pumo10g00050 714 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 73 357 IPR005477 GO:0008661|GO:0016114
Pumo10g00050 714 Gene3D - 571 702 IPR009014 GO:0003824
Pumo10g00050 714 Gene3D - 393 560 - -
Pumo10g00050 714 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 392 560 - -
Pumo10g00050 714 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 50 709 IPR005477 GO:0008661|GO:0016114
Pumo10g00050 714 MobiDBLite consensus disorder prediction 358 379 - -
Pumo10g00050 714 Pfam Transketolase, pyrimidine binding domain 394 555 IPR005475 -
Pumo10g00050 714 Pfam Transketolase, C-terminal domain 571 694 IPR033248 -
Pumo10g00050 714 SUPERFAMILY TK C-terminal domain-like 566 702 IPR009014 GO:0003824
Pumo10g00050 714 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 392 581 IPR029061 -
Pumo10g00050 714 MobiDBLite consensus disorder prediction 361 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00050 Pumo-Chr10 1098610 1105813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00050 431 653 Acyl Lipid Metabolism Gene Families AT1G55510 25.000 1.64e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00050 K01662 - gmx:100793268 1327.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00050 10 1098610 1105813 Pumo10g00050 10 1098610 1105813 ECH