Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00027 ATGTCCAACAATCTGGTTTCAGAGCCAATATCAAGCATGCAGATGGCTCAATTGGAGCCCCTTATGAACAAGGTTGATTCATCAGGGAGACAGATGGAAATGGGGCTCTTGGGTCCTGTATCCAGTGATATCGTGTCACAGTCGCAGGGAACCTCAAATGAACATGTTGGATTATTGAGAGCTGTGCCTGGTGAACCTAGGTCTCAGGGCTTACCCCTTTCGAGCATGCAGAGTGGGCAAGTAGAAGGACAAGCAAGTAATCCAGGAATGCATCAAATTCTTTCCACTAACAAACAGTCCATGCAAATGGGGATGCTTCCGAATAGCTCAGGGCCACAGCAGCATCCAATAACTCCCAAGCGCAAGGCACCAATGGAACTATCGTACAGTAGCTCCTTTAACAAGCGGGTTGCACAAATGGGAAATAGACCTTGGTTGCAGCAAGTACCTAATGCATCAAATAAAGGTTCTCTGCAGATGCAATCCCCGTCAAATGCCTCCAGGACACAACATTCAGCAGCTTCTAATAAGAGAAAAACACAGTTGGATAACACTCCCAGTAAATCTGGGACACCTCGGTCCGTGAATTCTAGAAGTCAGAATATGCAGATGAAGCAGTCCTCCAAGGTTCAAACTGAATCATCCGATAGTGTTAGGTCCAAGATGAGAGAGTCTTTAGCTGCTGCTCTGGCCTTGGTTTCTCAGCAAGGTAAACCTCAGCTCCCAAACAATAATACACCAAATGACGCTGCCAATACTCATGGTAAATTAGAGAACAGCTCTCAGTGTGCTGGACCAGCACCTGCATCCATTGATGCTTCACTGGAGCAAAGGCAGGATATTTCTCATTCAGTTAATTCCTCTTTTGCTGAGGCTGATTCAGTTCGCCATGTGGCAGGAGAGCACATGCAAAGTACATCATTTAATGAAGATTTTCCGGAAAAATACAAGGACTATGAAGCAGGATCCACAAATGCATCGAACAATGAAAGCATACTGAATTCTATGCATGTCTTGAACTGTGATAAGCAAGATTTCCAGTCAAGTTACACTTTGACTACTGATGATGTTCCTTTCAGTGACAATTTCTTTATGAAAGATGATCTTTTGCAGGGAAATGGTCTTTCGTGGGTATTATCTGATATGGTGGACGTGGGAAATCAAAGGGAAAGTCAGACTAATATAGAGCAGAGATCAGAACCTGAGGAAACAGGTGGAGGTTGTAGGGAGGAGGTCCCTTTGCCTGAACTTTTGGCATCAAGAATAGAAGCAGAACTCTTCAAACTGTTTGGAGGTGTGAATAAGAAGTACAAAGAGAAAGGGAGGTCTCTTTTATTCAATTTAAAAGATCGCAATAATCCTGAACTTAGAGAAAGGGTTATGTTTGGTGAAATTCCTCCAGAACAATTATGTTCCATGACAGCTGAGGAACTTGCTTCAAAGGAGCTCTCTCAGTGGCGGATAGCCAAGGCTGAGGAGCTTGCTCAAATGGTGGTTTTACCTGATTCAGATGTTGATTTTAGACGTTTGGTCAGGAAGACACATAAAGGTGAATTTCAAGTGGAAGTTGAACATGAAGACAATGTCCCTGTGGAGGAGGTTTCAGGTGGCACAACCTCTGTTGCTCGAAGCCAAACAATAAAAAAGGATGTGGAAGATGCTTCTCCTTCCAAACCTGATGTGAACACTGATGCTGAGAAGGGCAATTTACAGAAGGATGATACATTTTCCATTACCATTTCTTCCAACGACGGGGCTGATCTCATGCAAGGGCTTATGACTGATGATGCATTAAAGGACCCTGACTTTCTTCCACCAATTGTCTCTCTTGATGAATTCATGGAATCTCTTCATTCTGAGCCACCATTTGAAAATTTACCGGTAGAATCTGGGAAAGTGACACCTACTTCAGACAAGGATGATTCTGGGGTTGGATCTAAATCAAAATCTTCTGATTTAACACCAAACGAGCAAGCTGATGTCACTGCTGATAAGTCTGAGAAGTTTCAAAGCACATGGGTAAATTCAGATGCTGAAAAAGAGAAAAAGGTTAATGCTGAATCTGGGGCCATTTCTTCTGATGTGGGATACAGTGGGAGTCAAGCTGACATGAAGTCAACTGATGGTCGTACCAAGGAAAGGTCAACTGATGATGTGAAGTCTGCTTCCAGCGATGCTGAGTTGAGAGGCAATCAGTTTCATGCGGAAGAGAGATATGGTAATAATAATAGGTACTTGAAGGATGCAGTCCTCACTAAGGGTGAATGCCTCTGGGAGGGAATGCTTCAACCAAATATCTCTACTACTCAGTCAGTCATTAGCATCTTTAAGAGTGGTGAGAAAACTGCTGCTAAAGACTGGCCTGGGTTTCTCGAGATCAAGGGAAGGGTTCGACTTGATGCATTTGAGAAATTTCTGCAAGACCTTCGACTGTCCAGAAGTCGTGCAATCATGGTTTCACATTTCGTTTCCAAAGAATCGGACGAGCAATCAACTCTCCGTGAGGTGGCTGACTCGTACATTTTAGACGAGAGAGTAGGATTTGCTGAGCCTGTGAATGGAGTTGAACTTTACTTTTGCCCTCCTCATAAGAAAACAGTTGAAATGCTCAGCAACATACTTCCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGCCTAATTGGTATTATTGTATGGAGAAAAACTAATTTAACTTCGTCTATATCACCCACCACTGCATCACACCACAAACATGGCTCTAAAAGACAATACTTCAGTAGGAGACAGCAAGATATAAATGTGAATGCCAATTCCACCCACAAAGCAGTGCCCTCTACGGGCTTTAAGACCACCGAAAATGATGGTGATGTTGATGATGATGTTCCTCCCGGATTTGGGCCACCGGCGGCCCGAGTTGAGGATGACTTGCCGGAGTTTAATTTCTCCGGCAGTTCAAATCCGTCACACTTGGGCCAAAAACAAATGGGACCACCAGGTATGGTCCCATTACACTCGGTTAACCAAGCCCCACCACGCCCTGTAGAACAAATGAGGGAACTTGTACACAAATATGGGCAAAACAAACCAAATGTACCTCCGGTAAACTGGCAGGATAAATTTGGGGGGACAATTCAACCCTGGAATGATGATGATGATGACATACCTGAATGGCAGCCCCAAACCTCCCAGAATCAGTTTCCTCCCCAACAGACAATGCACAACTTTCATCTTCGACCTCACATTTTGAATCAATCATTTCCGGGTTCACAACAACAGCCAATTATGACACCACAATATCTGCAACCCCCAATGAATGCGACCCATGGCCAACGAAATTTTGACCCTCAGTGGGTTCCTTCTCCCCAGGGTAGTAGTAACCTACAGCCAAGAGGTGGACCGCCCTATGCGCAAGGCACTACCTGGCCTCAACATGTGCCTAGAAGTAGAGGATATTAG 3444 0.4416 MSNNLVSEPISSMQMAQLEPLMNKVDSSGRQMEMGLLGPVSSDIVSQSQGTSNEHVGLLRAVPGEPRSQGLPLSSMQSGQVEGQASNPGMHQILSTNKQSMQMGMLPNSSGPQQHPITPKRKAPMELSYSSSFNKRVAQMGNRPWLQQVPNASNKGSLQMQSPSNASRTQHSAASNKRKTQLDNTPSKSGTPRSVNSRSQNMQMKQSSKVQTESSDSVRSKMRESLAAALALVSQQGKPQLPNNNTPNDAANTHGKLENSSQCAGPAPASIDASLEQRQDISHSVNSSFAEADSVRHVAGEHMQSTSFNEDFPEKYKDYEAGSTNASNNESILNSMHVLNCDKQDFQSSYTLTTDDVPFSDNFFMKDDLLQGNGLSWVLSDMVDVGNQRESQTNIEQRSEPEETGGGCREEVPLPELLASRIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGEIPPEQLCSMTAEELASKELSQWRIAKAEELAQMVVLPDSDVDFRRLVRKTHKGEFQVEVEHEDNVPVEEVSGGTTSVARSQTIKKDVEDASPSKPDVNTDAEKGNLQKDDTFSITISSNDGADLMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLPVESGKVTPTSDKDDSGVGSKSKSSDLTPNEQADVTADKSEKFQSTWVNSDAEKEKKVNAESGAISSDVGYSGSQADMKSTDGRTKERSTDDVKSASSDAELRGNQFHAEERYGNNNRYLKDAVLTKGECLWEGMLQPNISTTQSVISIFKSGEKTAAKDWPGFLEIKGRVRLDAFEKFLQDLRLSRSRAIMVSHFVSKESDEQSTLREVADSYILDERVGFAEPVNGVELYFCPPHKKTVEMLSNILPKEQIEAVNSIDNGLIGIIVWRKTNLTSSISPTTASHHKHGSKRQYFSRRQQDINVNANSTHKAVPSTGFKTTENDGDVDDDVPPGFGPPAARVEDDLPEFNFSGSSNPSHLGQKQMGPPGMVPLHSVNQAPPRPVEQMRELVHKYGQNKPNVPPVNWQDKFGGTIQPWNDDDDDIPEWQPQTSQNQFPPQQTMHNFHLRPHILNQSFPGSQQQPIMTPQYLQPPMNATHGQRNFDPQWVPSPQGSSNLQPRGGPPYAQGTTWPQHVPRSRGY 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 546 571 - -
Pumo10g00027 1147 Pfam SPOC domain 753 895 IPR012921 -
Pumo10g00027 1147 ProSiteProfiles TFIIS central domain profile. 384 506 IPR003618 GO:0006351
Pumo10g00027 1147 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 110 980 - -
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 63 125 - -
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 935 955 - -
Pumo10g00027 1147 CDD SPOC_TFIIS 757 895 - -
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 388 409 - -
Pumo10g00027 1147 Pfam Transcription factor S-II (TFIIS), central domain 403 494 IPR003618 GO:0006351
Pumo10g00027 1147 SMART mid_6 386 489 IPR003618 GO:0006351
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 236 269 - -
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 70 116 - -
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 1098 1147 - -
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 691 705 - -
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 236 267 - -
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 147 222 - -
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 620 731 - -
Pumo10g00027 1147 Gene3D - 390 481 IPR036575 GO:0006351
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 147 215 - -
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 706 731 - -
Pumo10g00027 1147 SUPERFAMILY Elongation factor TFIIS domain 2 415 482 IPR036575 GO:0006351
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 637 673 - -
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 1098 1129 - -
Pumo10g00027 1147 MobiDBLite consensus disorder prediction 531 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00027 Pumo-Chr10 824733 831504 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00027 - - gmx:100808809 2041.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00027 10 824733 831504 Pumo10g00027 10 824733 831504 ECH