Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00005 ATGAGCAGACCAACAACACGAAGTAAAAATAAAAGACAGAGACAAGGGGATGATGGCAATTGCACTGGTGAAATATGGAGGAAAATTCATAATACAGGTGTGGTAACTGAGGATGACATGAATCAATTGTATATGATTTGGAAGCCGGTTTGTTCAGGCTGTCGTGTCAATACCAAAGATAACCCAAATTGCTTCTGTGCGTTGGTTCCACCTCAAAATGGAGCCCGGAAGTCTGGCTTATGGCAAAAGATGTCAGATTTTGTTGATAGTCTTGGCCATGACCCAACCAAGGATCTTCGAGCTTCTGCTGATTCTCCTGCAGGTCTCACAAATCTTGGTGCAACATGCTATGCCAACAGTATACTCCAGTGCTTGTACATGAATAAATCATTCCGAGAAGGCATATTTTCTGTAGAACGAGATGTTTTACAACAACAGCCTGTGCTTGATCAGCTGGCTCGACTTTTTGTGCAGTTGCATATTAGCAAAATGGCTTTCATAGATTCTTCTCCATTTGTAAAAACACTGGAATTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTCCTGACACTGCTTCTCTCTTTGCTTGAGCGTTGTCTGAGCCATTCCAAAGTGCCCAAGGCAAGAACAATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACGACGTGCTCACAATGTGGAAGAGACTCTGAAGCTTCTTCTAAAATGGAAGATTTCTATGAATTGGAGTTGAATGTGAAGGGATTGAAAAGTTTAGATGAGAGCCTAGATGAATATCTCACTGTTGAAGAGCTTAATGGAGACAATCAATATTTTTGTGAGTCGTGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACATTACCCAAAGTACTTAATTTTCAACTTAAACGCTATGTCTTCCTTCCTAAGACTACAACAAAGAAGAAAATTACTTCTGCATTTTCATTTCCTGCTGAACTTGATATGCGGCATAGAATGTCTGAGTTGTCTCAGTTCGACTTGGTATATGACTTGTCAGCTGTACTGATTCACAAGGGAACTGGTGCTAATAGTGGCCATTACATTGCTCACATCAAGGATGTAAACACTGGGCAATGGTGGGAATTTGATGATGAGCATGTTACTAATTTGGGTTGTCATCCATTTGGTGAAGGGTCTTCAAGTTCTACCACTAAATCCATCAAGACTGATGCAATTCATTCTGATAGTTCTGAAGCAATGATAGCCGACAGCAATGGAAATGGTTTAAATGCCACTCATTCACAATCTTCGCATGTGGAGACATTTTTGTCTAGTGATGCGTACATGTTGATGTACCATCTTAAACATACAAAAAATGTAGGTGAAAGTGGGGGTGTAATTTTTGGTGCTAACCATAAAGAAAGAGAGGGTGCTGCTGTGCAAAATGGAGCTCCTTTTCCATCTCATATTTATGATGAGATTCAAAATTTCAATGCCTCATATGATGATGCTTGTCAGCAGTACAATAATAGGAAAGAGTTAGAATTGAGTCGTATTAGTGAGAGGAGACAGGAAGTTCGATCTGTTTTAGCTGAAGCTCCTGTTCAACCAATGGAGCAACCATTTTATTGGATTTCTAGTGAATGGCTTCGTCAATGGGCCGACAACATTATTCCTATTCTTCTTGACAACACGTCTGTCCAATGCTCACATGGGAAAGTCCCAGTTTCAAAGGTTACCTCAATGAAGCGATTGTCTGCTAAAGCGTGGGATACATTGTTCTCCAAGTATGGTGGGGGCCCAGCATTGTCTCATGATAATCACTGTTGGGATTGCCTGATTCATGGGGCTATGACAGTGGTTTCAGCTGACACCTATCGGGATAGAAGAGAATCAATGAAGTCACTTGCACGGGATATTCTAGATGGAAACTGCGTAGATGGAAAGTATTACATATCCAGACCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCATCTGAAGCTGATGCTGGACCAACAGCAGCCATTAGTTGTCCACATGGTCAACTGATGCCTGAGCAAGCTCCTGGTGCTAAGCGAGTGCTTATTCCTGAGAGCTTTTGGCTCTTCTTATATGAAGATGCTGTTTCTGTAAAGCCTGATGATCCTTTGGGTGGCCAAACTTTTTCTTCAGATTCTGAAGAGTGTTCCCAATGCAGTAATGAATTATCTGAAGTAGCATGCTTGGAGGACTCCTTGAGATTAGTTAAACAAAAGCAACGTCAGAATCATGAGAAATTGTTCCAGGCTAAAAGTATGCCACTTTCTCTGCATTGCAAGTATTTCTTGGTGCCTTCGTCATGGATTTCCAAATGGCGAAATTACATTAGTCCAACTCTGAAGAATTCTGATAAACCTGAAACTTTAGATGGTGTAATTGATTCACTGTTGTGTGAGAAGCACTCACAGCTTGTTGAAAGACCTCCTGAATTGGTTTTCAGACGTGGTGCTATAATCCAGAGGGAATCTTCTGCAGGTGGCTTAACCATTGTATCTGAGAATGATTGGAAATGCTTCTGTGAAGAATGGGGCGGTATTGAGACCAAAGGAATATCTGCAACAATTGATCATGTTACTGATTCAGAGAATGTTTTGACTGGATCCAGTGAAGAGACGCTAATATGTAAGGATCAGTTGGGCACAGCGGATAAAATGAATTATGAAAATGGGACTGGACAAATTTTAATTAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAGAGAGAGCTGTGAGCTAATGCAGAAACTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTTCGTGGTAAGGAGGTACCTAGATCAATATTGGAGGCTTCAAAGGGATTCGTCGAAACAGATCGGCGAGTTTCCAAGCGTTCCCGCAAGACTAAAAATGGGAGTTCAATTAGTCTAAAAGTTTCTGCTTCAACATCTTTATATCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTCAAGGAAAACCAGATACTACATAAAGGTGATAGGATAATTGATAGTGATAATGAATGTGCTACCCTCGCAGATGTGAACATATTTGCTGGAGACCAGATTATAGTGAGGGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACCGAGGAAGGGTTCCGTGGAACACTTCTCACAGCAAATGTTTCATCCCAGTTGCAGGGGTATTGA 3252 0.4114 MSRPTTRSKNKRQRQGDDGNCTGEIWRKIHNTGVVTEDDMNQLYMIWKPVCSGCRVNTKDNPNCFCALVPPQNGARKSGLWQKMSDFVDSLGHDPTKDLRASADSPAGLTNLGATCYANSILQCLYMNKSFREGIFSVERDVLQQQPVLDQLARLFVQLHISKMAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVPKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKMEDFYELELNVKGLKSLDESLDEYLTVEELNGDNQYFCESCKTRVDATRSIKLCTLPKVLNFQLKRYVFLPKTTTKKKITSAFSFPAELDMRHRMSELSQFDLVYDLSAVLIHKGTGANSGHYIAHIKDVNTGQWWEFDDEHVTNLGCHPFGEGSSSSTTKSIKTDAIHSDSSEAMIADSNGNGLNATHSQSSHVETFLSSDAYMLMYHLKHTKNVGESGGVIFGANHKEREGAAVQNGAPFPSHIYDEIQNFNASYDDACQQYNNRKELELSRISERRQEVRSVLAEAPVQPMEQPFYWISSEWLRQWADNIIPILLDNTSVQCSHGKVPVSKVTSMKRLSAKAWDTLFSKYGGGPALSHDNHCWDCLIHGAMTVVSADTYRDRRESMKSLARDILDGNCVDGKYYISRPWLQQWWKRKVLDAPSEADAGPTAAISCPHGQLMPEQAPGAKRVLIPESFWLFLYEDAVSVKPDDPLGGQTFSSDSEECSQCSNELSEVACLEDSLRLVKQKQRQNHEKLFQAKSMPLSLHCKYFLVPSSWISKWRNYISPTLKNSDKPETLDGVIDSLLCEKHSQLVERPPELVFRRGAIIQRESSAGGLTIVSENDWKCFCEEWGGIETKGISATIDHVTDSENVLTGSSEETLICKDQLGTADKMNYENGTGQILIKTCPEVCESCIGERESCELMQKLNYCNEDICVILVRGKEVPRSILEASKGFVETDRRVSKRSRKTKNGSSISLKVSASTSLYQLKMMIWESFGVVKENQILHKGDRIIDSDNECATLADVNIFAGDQIIVRDSEIHENRDIADELCDDKMDLQHTEEGFRGTLLTANVSSQLQGY 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00005 1083 CDD Ubl_USP48 971 1072 IPR044743 GO:0004197|GO:0004843|GO:0016579
Pumo10g00005 1083 Gene3D - 970 1041 - -
Pumo10g00005 1083 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Pumo10g00005 1083 Gene3D - 743 863 IPR035927 -
Pumo10g00005 1083 FunFam ubiquitin carboxyl-terminal hydrolase 48 94 450 - -
Pumo10g00005 1083 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Pumo10g00005 1083 MobiDBLite consensus disorder prediction 1 22 - -
Pumo10g00005 1083 SUPERFAMILY Cysteine proteinases 106 451 IPR038765 -
Pumo10g00005 1083 ProSiteProfiles DUSP domain profile. 512 604 IPR006615 GO:0004843
Pumo10g00005 1083 FunFam Ubiquitin carboxyl-terminal hydrolase 26 503 601 - -
Pumo10g00005 1083 ProSiteProfiles Ubiquitin domain profile. 972 1038 IPR000626 GO:0005515
Pumo10g00005 1083 FunFam Ubiquitin carboxyl-terminal hydrolase 26 970 1041 - -
Pumo10g00005 1083 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 70 449 - -
Pumo10g00005 1083 SUPERFAMILY DUSP-like 514 604 IPR035927 -
Pumo10g00005 1083 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
Pumo10g00005 1083 Gene3D Cysteine proteinases 90 450 - -
Pumo10g00005 1083 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Pumo10g00005 1083 ProSiteProfiles DUSP domain profile. 747 867 IPR006615 GO:0004843
Pumo10g00005 1083 SMART dusp 530 601 IPR006615 GO:0004843
Pumo10g00005 1083 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Pumo10g00005 1083 ProSiteProfiles DUSP domain profile. 619 726 IPR006615 GO:0004843
Pumo10g00005 1083 SUPERFAMILY Ubiquitin-like 972 1039 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00005 Pumo-Chr10 556197 568106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00005 105 385 Miscellaneous Gene Families AT4G31670 28.571 5.56e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00005 - - gmx:100815770 2077.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00005 10 556197 568106 Pumo10g00005 10 556197 568106 ECH