Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00003 ATGGCCATTCTCCACTGCACGCCACTCCCATTTCTTTCTCTGAGAACCACCATCAGTTCCTCCAAGTCCACGTTAACCTTAACGCTGACAAACCCAACAACAAAAACAAGAATTCGGTCGTTCCTAGCAATGAACATGTTCGCCAAATCCGAACCCGTGTCGTCTTCAGCCTCTTCATCATCATCAACGTACCGGGTGCCGGAACAAGATGCTAACGACGTGGACCGCGTAGCAGACAACACGTTTCGAAGGTACACGTCCAACACCAAGAGGAGTGGCAGAGGAACAGCCATTGTGTGGTTCAGGAACGATCTCAGAGTTTTGGATAATGAGGCTCTCTATAAGGCATGGCTTTCCTCCGAAACCGTGTTACCTGTCTATTGTGTTGACCCTCGACTCTTTGCCACTACTTATCATTTCGGCTTTCCAAAAACCGGTGCATTGAGAGCGCAATTTCTCCTTGAATGCTTGGCTGACTTGAGGAAGAATTTGATGAAAAAAGGACTTAATTTGCTTGTACAACATGGGAAGCCTGAGGATATTCTTCCTTCTCTCGCAAAAGCTTTTCAAGCTCACACAGTATATGCACAGAAAGAAACTTGCAGTGAGGAGGTCAATGTTGAAAGGTTAGTCATCAGAGGTCTTAAACAAGTTGTGATAACACCTGAGGAGTCCAGCGGTGTCACAGTTTCAAACAACATCCCTAAGTTGCAATTAGTTTGGGGTACCACCATGTACCACCTTGATGACCTCCCTTTTGATGCCACTTGTTTGCCAGATGTGTATACTCAATTTCGTAAGATTGTTGAAGCCAAATGTGTACGCTCATGCATCAAACTACCAACATCTCTTGGACCACCTCCCACAGTTGAGGATTGGGGATGCCTTCCTTCATTAGAGCAGCTAGGACTTTGCTCACAGAATGTTAGCAAAGGGATGAAGTTTGTCGGGGGTGAAACTGCGGCATTGAGCAGAGTATATGAGTACTTTTGGAAGAAGGATTTGCTCAAGGTATATAAAGAGACCAGGAATGGGATGTTGGGGCCTGATTATTCTACCAAATTCTCACCATGGCTTGCCTCAGGAAGTTTGTCTCCTCGTTTCATATATGAAGAGGTGAAGAGATATGAGAACGAAAGACTAGCAAATAGTTCTACCTACTGGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATTTAGGTGGCCCTAGGAAAGTTCAGCGCAACTGGAGCCAAGACAAGAATTTGTTTGAATCCTGGAGAGATGGTTGTACTGGGTATCCTCTGATAGATGCCAATATGAAAGAATTATCAACTACAGGATTTATGTCAAATCGAGGACGGCAGATTGTGTGTTCCTTTCTTGTTCGTGATATGGGCATAGATTGGCGCATGGGAGCAGAGTGGTTTGAGACATGTCTTTTAGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGATCAGGAGTTGGGAATGATCCCAGAGAAGATCGTTATTTCAGCATCCCAAAACAAGCACAAACATATGACCCTGAAGGTGAGCATGTTGCATACTGGTTGCCGCAGTTGCGAAAAATCCCAAAGGAGAAAAGGAACTTCCCTGGAAATTTATACATTCCTCAAATTGTGTCTCTCAAGTTTGGAACAGCTAGTGGACACAATAAGGACAAGTCCCATGGTGCAAGAAGAGCCAACGATAGAGGAAGTGAAAGAAGATCGAACAGGAGATAA 1776 0.4409 MAILHCTPLPFLSLRTTISSSKSTLTLTLTNPTTKTRIRSFLAMNMFAKSEPVSSSASSSSSTYRVPEQDANDVDRVADNTFRRYTSNTKRSGRGTAIVWFRNDLRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPKTGALRAQFLLECLADLRKNLMKKGLNLLVQHGKPEDILPSLAKAFQAHTVYAQKETCSEEVNVERLVIRGLKQVVITPEESSGVTVSNNIPKLQLVWGTTMYHLDDLPFDATCLPDVYTQFRKIVEAKCVRSCIKLPTSLGPPPTVEDWGCLPSLEQLGLCSQNVSKGMKFVGGETAALSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEEVKRYENERLANSSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGPRKVQRNWSQDKNLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEHVAYWLPQLRKIPKEKRNFPGNLYIPQIVSLKFGTASGHNKDKSHGARRANDRGSERRSNRR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00003 591 NCBIfam DASH family cryptochrome 96 537 IPR014133 GO:0003913|GO:0006281
Pumo10g00003 591 Pfam DNA photolyase 97 274 IPR006050 -
Pumo10g00003 591 PRINTS DNA photolyase signature 497 511 IPR002081 -
Pumo10g00003 591 PRINTS DNA photolyase signature 458 476 IPR002081 -
Pumo10g00003 591 PRINTS DNA photolyase signature 438 454 IPR002081 -
Pumo10g00003 591 PANTHER CRYPTOCHROME 94 551 IPR002081 -
Pumo10g00003 591 Gene3D HUPs 61 242 IPR014729 -
Pumo10g00003 591 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 95 230 IPR006050 -
Pumo10g00003 591 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 313 549 IPR036134 -
Pumo10g00003 591 Gene3D - 243 411 - -
Pumo10g00003 591 Pfam FAD binding domain of DNA photolyase 391 546 IPR005101 -
Pumo10g00003 591 MobiDBLite consensus disorder prediction 567 591 - -
Pumo10g00003 591 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 95 289 IPR036155 -
Pumo10g00003 591 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 412 566 - -
Pumo10g00003 591 MobiDBLite consensus disorder prediction 565 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00003 Pumo-Chr10 540637 545769 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00003 K25656 - gmx:100783312 1073.92