Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01148 ATGCTTCCACAGGGTGTGAAGAAGACTCTTACTGATAATCCAAAGAAGCTTGCCAACTTGATTGACCTCATTAACGTTCCAACAACACTGCGTGAAGTCGTGGGTCAGTCTCAGATTTCGCGTCTTGGATGTTTCATGCGGGTTTGGTCTTATATTAAAACCAACAATCTTCAGGACCCGAACAACAAGAACGTGGTCAATTGTGACCAGAAACTGAAAAGTATTCTGTTGGGGAAATCTAAAGTTGAGCTAGCTGAACTTCCAGCTCTTATCAAGCTGTATTTTCCGAAGGTGCCAAAGTAG 303 0.429 MLPQGVKKTLTDNPKKLANLIDLINVPTTLREVVGQSQISRLGCFMRVWSYIKTNNLQDPNNKNVVNCDQKLKSILLGKSKVELAELPALIKLYFPKVPK* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01148 100 SMART swib_2 20 100 IPR019835 -
Pte9g01148 100 Pfam SWIB/MDM2 domain 25 95 IPR003121 -
Pte9g01148 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 12 99 - -
Pte9g01148 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
Pte9g01148 100 SUPERFAMILY SWIB/MDM2 domain 16 99 IPR036885 -
Pte9g01148 100 CDD SWIB-MDM2_like 30 95 - -
Pte9g01148 100 Gene3D SWIB/MDM2 domain 15 100 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01148 Pte-Chr9 33187409 33193537 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pte9g01148 SWIB 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01148 - - minc:123211557 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g01148 9 33187409 33193537 Pte9g01148 9 33187409 33193537 RCT