Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00443 ATGGCTGAACCTTCCAAGGTTATTCACGTCCGTAACGTGGGACATGAAATATCTGAAAATGATTTGCTCCAGCTATTCCAACCATTTGGAGTCATAACCAAGCTTGTTATGCTGCGAGCAAAAAATCAGGCTCTAATCCAAATGCAAGATATTCCTTCAGCTGTTAATGCCTTACAATTTTATGCCAATGTCCAGCCCAGCATAAGGGGGAGGAATGTGTATGTCCAGTTCTCTTCACATCAAGAATTAACAACTATGGATGGTAACAGTCAAGGACGAGGTGACGAGCCAAATCGAATTCTGTTAGTTACAATCCATCACATGCTATACCCTATTACAGTGGACGTGCTGAGTCAAGTTTTTTCTCCTCATGGATCTCTGGAAAAGATCGTAACATTTCAGAAGTCAGCTGGCTTTCAAGCTCTCATTCAATACCAATCACGTCAGAGTGCCGTTACAGCTAGAAGTTTGCTTCAGGGGCGTAATATCTACGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAATTGCAAGTGAACTATAATAACGAGCGGTCAAGAGATTTTACAAACCCAAATCTTCCCACTGAGCAGAAAGGCAGACCTTCACAACAAGCATATGGTGATGGAGGGAGCATGTACGGTGTACAAGCATCTGGAGCCAGGGCAGTGGGATTTCCACAGATAGCTAATGCGGCTACTATTGCTGCGGCCTTCGGGGGAGGTTTACCTCCTGGAATAACAGGGACAAACGATAGGTGTACAATTCTCGTCTCGAACCTTAATACCGATAGAATAGATGAGGACAAACTTTTTAATTTGTTCTCCATTTATGGGAATATAGTGAGAATTAAAATCCTCCGCAATAAGCCTGATCATGCACTCGTTCAGATGGGTGATGGCTTCCAAGCAGAGTTAGCTGTACACTTTTTGAAGGGAGCGTTGCTGTTTGGTAAGCGAATGGAAGTCAATTATTCCAAGCATGCAAGTATAACTCAGGGTGCTGATACACATGATTACACAAATTCAGTTCTTAATCGATTCAACAGAAATGCTGCCAAGAATTACCGGTACTGTTGTTCCCCAACGAAGATAATCCACCTGTCCAGTCTCCCAGAGGATGTATCTGAGGAGGACATTTTGAGCCTGGTGGAGGAACATGGTCCAATTGTCAACAGTAAGGTCTTTGAGATGAATGGGAAAAAGCAAGCACTTGTTCAATTTGAGACTGAGGAGCAGGCCACTGAGGCTTTGGCGTGCAAGCATGCTAGCCCTCTTTCTGGTTCAACCGTCCGAATTTCGTTTTCCCAGTTGCAGGGGATATAA 1335 0.439 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALIQMQDIPSAVNALQFYANVQPSIRGRNVYVQFSSHQELTTMDGNSQGRGDEPNRILLVTIHHMLYPITVDVLSQVFSPHGSLEKIVTFQKSAGFQALIQYQSRQSAVTARSLLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPTEQKGRPSQQAYGDGGSMYGVQASGARAVGFPQIANAATIAAAFGGGLPPGITGTNDRCTILVSNLNTDRIDEDKLFNLFSIYGNIVRIKILRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRMEVNYSKHASITQGADTHDYTNSVLNRFNRNAAKNYRYCCSPTKIIHLSSLPEDVSEEDILSLVEEHGPIVNSKVFEMNGKKQALVQFETEEQATEALACKHASPLSGSTVRISFSQLQGI* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00443 444 Gene3D - 1 94 IPR012677 -
Pte9g00443 444 Gene3D - 351 443 IPR012677 -
Pte9g00443 444 NCBIfam hnRNP-L/PTB/hephaestus splicing factor family 4 440 IPR006536 GO:0003723|GO:0005634|GO:0006397
Pte9g00443 444 Gene3D - 98 202 IPR012677 -
Pte9g00443 444 SUPERFAMILY RNA-binding domain, RBD 97 198 IPR035979 GO:0003676
Pte9g00443 444 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 422 - -
Pte9g00443 444 Gene3D - 251 349 IPR012677 -
Pte9g00443 444 MobiDBLite consensus disorder prediction 187 212 - -
Pte9g00443 444 CDD RRM1_PTBPH3 6 80 IPR034795 -
Pte9g00443 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Pte9g00443 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 434 IPR000504 GO:0003723
Pte9g00443 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 338 - -
Pte9g00443 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 331 IPR000504 GO:0003723
Pte9g00443 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Pte9g00443 444 SMART rrm1_1 368 437 IPR000504 GO:0003723
Pte9g00443 444 SMART rrm1_1 258 327 IPR000504 GO:0003723
Pte9g00443 444 SMART rrm1_1 7 76 IPR000504 GO:0003723
Pte9g00443 444 SMART rrm1_1 102 171 IPR000504 GO:0003723
Pte9g00443 444 Pfam RRM-like domain 96 175 IPR021790 -
Pte9g00443 444 CDD RRM4_PTBPH3 360 438 - -
Pte9g00443 444 CDD RRM3_PTBPH3 256 331 IPR034797 -
Pte9g00443 444 MobiDBLite consensus disorder prediction 187 208 - -
Pte9g00443 444 SUPERFAMILY RNA-binding domain, RBD 255 439 IPR035979 GO:0003676
Pte9g00443 444 SUPERFAMILY RNA-binding domain, RBD 3 93 IPR035979 GO:0003676
Pte9g00443 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 441 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00443 Pte-Chr9 5370724 5378114 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00443 K14948 - gmx:100819672 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00443 9 5370724 5378114 Pte9g00443 9 5370724 5378114 RCT