Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00311 ATGGGAAATTCATTTGGTTGTTCGGCTTCTGGGGAGAGATTGGTATCGGCTGCGAGGGATGGTGATTTGATAGAAGCCAAGATGTTGTTAGATTGTAATCCATGCCTTGCAAAGTATTCAACTTTTGGTGGTCTTAATTCACCTCTTCATTTCGCTGCAGCTAAAGGCCACAACGAGATAGTGGCGTTATTACTCCAGAATGGAGCTGATGTAAATTCGAGAAATTACTGCGGCCAGACGGCATTGATGCAAGCATGTAGATATGGGCATTGGGAAGTTGTACAGACTCTTCTGATTTTCAGATGCAATGTCACTAAGGCAGATTATCTTAGTGGGAGAACGGCCCTTCATTTTGCTACTGTAAATGGGCATGTAAGATGTATTAGACTTGTTGCAGCTGATTTTATTCCAAGTTCTCCGTACGAGACTATGCAATCCCGGACAGGAGATGATAATAGGGAAGTTGCAAGTATGAAGAATAAATCTGAGCAGAGTGCGCTATCTAAGTTTGTTAATAAGGCAGCTGATGGTGGTATTACTGCTCTTCATATGGCCGCATTGAACGGGTATTTTGAATGTGTACAGCTCCTACTTGACCTTAATGCTAATGTGTCTGCTCTGACATTTCATTATGGAACATCCATGGACTTGATAGGAGCTGGAAGCTCACCGTTGCATTATGCAGCTTGTGGTGGCAATTTAAAATGCTGTCAGATGCTAATTGCAAGAGGTGCTAGTCGAATGACTTTAAATTGCAATGGGTGGCTTCCCCTTGATGTTGCTAGGATGTGGAGCCGTCGCTGTCTTGAACCACTGCTATCTCCCAATTCGGACTTGCCAATACCAGTGTTCCCTCCTTCCAGTTACTTGTCTTTGCCTCTCATGAGTATACTAAACATAGCAAGGGAGCATGGTTTGCATTCACCGACAGCAACATCTGATGAGGTTGACATGTGCGCTGTCTGCCTGGAGAGATCATGTTCAATTGCTGCTGAAGGATGTGGGCATGCACTTTGTGTTCAATGTGCTCTCTACCTTTGCTCAATGAGCAATAGGCCATCCCCTGTGCTTGGCCCTCCTGGATCGATCCCCTGCCCTCTTTGCAGACATGGGATTGTCTCTTTCATCAAATTGCGCAAGTCACCTGCAAAAGATAATAGGTTACCTGCGACCCTGGGCTTTTGTACCCCATGTATGCTGCACCATCATCGTGACTCCAATCGGCCATCTCCTGCATGCCAGCCTGAGATTCGTAAAAATCGGGTTGCTTCTGTACCTTCTGATCTGCTCTGTCCTGTCACTTGTAGTCCATTTCCATCCATGGCAATGCCATTGTGCACTTGCAACGATGGTCCATGCCCATCTTTTGAAGATGAGGACACAGAATCACAAAATGAATCACCACGTGGTTCACAAGCACCAGCTGCAGATGAGGATAAAATAGATGGTCCGAGACTTGAAAGGACTAGTTGTTCAAGCATGTTCTGGGGAAGAAGAAGCTGCAGCAGGGAGCACCAGTGCAACTCAGAGATAAATGCTTGA 1542 0.4565 MGNSFGCSASGERLVSAARDGDLIEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLQNGADVNSRNYCGQTALMQACRYGHWEVVQTLLIFRCNVTKADYLSGRTALHFATVNGHVRCIRLVAADFIPSSPYETMQSRTGDDNREVASMKNKSEQSALSKFVNKAADGGITALHMAALNGYFECVQLLLDLNANVSALTFHYGTSMDLIGAGSSPLHYAACGGNLKCCQMLIARGASRMTLNCNGWLPLDVARMWSRRCLEPLLSPNSDLPIPVFPPSSYLSLPLMSILNIAREHGLHSPTATSDEVDMCAVCLERSCSIAAEGCGHALCVQCALYLCSMSNRPSPVLGPPGSIPCPLCRHGIVSFIKLRKSPAKDNRLPATLGFCTPCMLHHHRDSNRPSPACQPEIRKNRVASVPSDLLCPVTCSPFPSMAMPLCTCNDGPCPSFEDEDTESQNESPRGSQAPAADEDKIDGPRLERTSCSSMFWGRRSCSREHQCNSEINA* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00311 513 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Pte9g00311 513 Gene3D - 141 283 IPR036770 -
Pte9g00311 513 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Pte9g00311 513 Pfam Ankyrin repeat 178 208 IPR002110 GO:0005515
Pte9g00311 513 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Pte9g00311 513 SUPERFAMILY Ankyrin repeat 15 272 IPR036770 -
Pte9g00311 513 MobiDBLite consensus disorder prediction 457 486 - -
Pte9g00311 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 386 IPR013083 -
Pte9g00311 513 Pfam Ankyrin repeats (3 copies) 211 278 IPR002110 GO:0005515
Pte9g00311 513 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Pte9g00311 513 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Pte9g00311 513 PANTHER MYOTROPHIN 111 261 - -
Pte9g00311 513 SUPERFAMILY RING/U-box 318 376 - -
Pte9g00311 513 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Pte9g00311 513 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Pte9g00311 513 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Pte9g00311 513 SMART ANK_2a 77 106 IPR002110 GO:0005515
Pte9g00311 513 SMART ANK_2a 44 73 IPR002110 GO:0005515
Pte9g00311 513 SMART ANK_2a 177 206 IPR002110 GO:0005515
Pte9g00311 513 SMART ANK_2a 111 142 IPR002110 GO:0005515
Pte9g00311 513 SMART ANK_2a 220 252 IPR002110 GO:0005515
Pte9g00311 513 Gene3D - 6 134 IPR036770 -
Pte9g00311 513 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Pte9g00311 513 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00311 Pte-Chr9 3430742 3434984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00311 17 241 Miscellaneous Gene Families AT3G12360 27.197 1.18e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00311 K19044 - vvi:100252095 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00311 9 3430742 3434984 Pte9g00311 9 3430742 3434984 RCT