Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00127 ATGGCTGGTGGTTTTGATGAAGAGTGTGATTACCTCTTTAAGGCTGTTCTTATTGGCGACTCTGGGGTTGGGAAATCAAATCTTCTGTCAAGATTTGCAAAGGATGAGTTTCGTTTGGATTCCAAGCCAACCATAGGTGTTGAGTTTGCATACAGGAATATCAGAGTTGGAGATAAACTCATCAAGGCTCAAATATGGGACACTGCTGGTCAAGAAAGGTTTAGAGCCATCACAAGTTCATATTACCGTGGAGCATTAGGGGCACTCCTAATTTATGACATCACCAGAAGAGGTACTTATGAAAATGTGAGAAAATGGTTAAGGGAGCTCAGAGAATTTGGAGACCAAGACATGGTAGTGGTTCTGGTTGGAAATAAGAGTGATCTAGCTGATCATGCAAGGGAAGTCAATGGGGAAGAAGGGAAAATTTTTGCCGAGAGAGAAGGATTGTGTTTCATGGAAACCTCTGCATTGCAAAACTTGAATGTGGAAGAAGCATTCTTACAAATGATCACTAAAATTCATGACGTTACGAGTCAGAAAATTTTGGAAGCGAAGATGAATGAGACGATAAGAAGTGTTCCTAACGGGAAAGAGGTAGTCATAGTGGATGAAGTCACTGCCACCAAACAATCAAATTGTTGTTCAACATGA 654 0.4083 MAGGFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIRVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLIYDITRRGTYENVRKWLRELREFGDQDMVVVLVGNKSDLADHAREVNGEEGKIFAEREGLCFMETSALQNLNVEEAFLQMITKIHDVTSQKILEAKMNETIRSVPNGKEVVIVDEVTATKQSNCCST* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00127 217 CDD Rab11_like 10 175 - -
Pte9g00127 217 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Pte9g00127 217 SMART rab_sub_5 13 177 - -
Pte9g00127 217 SMART rho_sub_3 15 173 IPR001806 GO:0003924|GO:0005525
Pte9g00127 217 NCBIfam small GTP-binding protein domain 12 167 IPR005225 GO:0005525
Pte9g00127 217 PRINTS Transforming protein P21 ras signature 36 52 - -
Pte9g00127 217 PRINTS Transforming protein P21 ras signature 54 76 - -
Pte9g00127 217 PRINTS Transforming protein P21 ras signature 116 129 - -
Pte9g00127 217 PRINTS Transforming protein P21 ras signature 13 34 - -
Pte9g00127 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Pte9g00127 217 FunFam ras-related protein RABA5a 5 215 - -
Pte9g00127 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 185 IPR027417 -
Pte9g00127 217 Gene3D - 5 215 IPR027417 -
Pte9g00127 217 ProSiteProfiles small GTPase Rab1 family profile. 8 215 - -
Pte9g00127 217 PANTHER DRAB11-RELATED 7 194 - -
Pte9g00127 217 ProSiteProfiles small GTPase Ras family profile. 7 203 IPR001806 GO:0003924|GO:0005525
Pte9g00127 217 SMART ras_sub_4 10 177 - -
Pte9g00127 217 SMART ran_sub_2 18 217 - -
Pte9g00127 217 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00127 Pte-Chr9 1422384 1424567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00127 14 167 EF-hand Containing Proteins AT5G27540 29.448 3.98e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00127 K07976 - qsu:111993335 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00127 9 1422384 1424567 Pte9g00127 9 1422384 1424567 RCT