Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00550 ATGGTTTGGGGTCTCTTTCCTGACGACCCTCAATCTGGTGAGGATGAATATTACATTTTCAGTAAAGGAAGCTATAGTGTTGGTCGAAAAGGTTGTGATGTCAGTATAACCAAAGATAAAGGAGTGTCTAGAGTACATGCTGAAATTGTTGTTACTGCTATGACAATACTAAATTCCCTAAACAGTGAAACTTCCACTGCATCTGGCAAAATTTACATCAAAGATTGCTCTAAGTATGGAACATTTATAAGCAAGAAGAATGGCCCTAAGAATAAAGTTCATGAGCTACCAAACAAAGAAGCTGTCTTAGAGGATGGAGATCACATATGTTTTGGAACTGGTACTGCAACTTACAGATTTTGCTTTGTCCCTCTTGTATTCTATATTTGTTGTTCCGATCACTTCCAGATGGATCAATCACTTCAAGATCGAATTTCATCAATTGGTGCTCGTGTCAGTCATACCTTAAATGAAGAGTGTACACATGCACTTGTCGATCAGGTTAAACCAGTGAACCTGCATCTCCTTGATGCTATCATAGCTAAGATGCCTGTTATACTTAGTACATGGGTCGAGTTTATTGCAGGAAAAAACATCTGCAATGAATTTCCAAGCTTTAGTTCCTACTTTCCATTGTTGACTGTGGAAGGAACATCTGTCCACATTGGTGACCCAAAAATTCGTGAAAAATGTTTGAGCGGATACACTCTTTTGTTGGAACCAGCGCATATGTATAAGTCAGGGTACCAATTTCAGTCTCTTCTGGAAGTAGGCGGTGCAATTGTCATTTTAGTTGGAGATTTTAGCCAAGTCTCAGATTATGGAGATGACAACCATGTCATCTATGTCATCCCTGGAGGGCATGCACACAAGTCTGATCACTTAAAGAAACTAACCTCCTTGTCTCGAATCAATGAGATGGACATATTATGTGCTGTTTTGCGTGGACAGTTGGACCCATCTACATTGTTATCACCATGTGTTCTTGTGTCATTATCTTGCTCCACTGATGCTTCCACTGATGAGACAGTGGTAGCAGATTCTGAAGCTGAAGATGAAACAGCCACCTCAATCCATGTTAATGCCACAGTGGAGAAAGGAGTTATAGGACATGATGATACTACCAAAAGCATAAGCAAAGAGAAGATATCTTTGGATGTAGCAACTACTAGTATAAATTTCTATTCAGCAGCAGTGGAGGAGGGTACTAGTAATATGACAGTGAGGAAGGCCAAAGATGACGAGTCTGAAAGTAGAAATTCAGATATTATCTACAGCCAGGATTTGGTTGTCAGACATACGAATGAACCTCTTGGGACCATTGCTGTAAAAGATAATGGAGTTCCAAATTTTAAATGCTTTCGAAAGGTGCAAACTCAATCTGGAAATAGCTTTGACAACCTTGTTCCATTTTCGAAATATCCTTACAATGATTCTGACTATGGGAATGAGGATGTGGTGGAAGCTGTGAAGGAAGAGAAGAAGCGAAAGCAAGTAGAAGCTATTGCAGAAGACTTATTCAATAATGAGAAGAGCAAACGACGTGGCACAGCTGGTTCACTTCGTAGCATCTTAACTTGA 1581 0.3978 MVWGLFPDDPQSGEDEYYIFSKGSYSVGRKGCDVSITKDKGVSRVHAEIVVTAMTILNSLNSETSTASGKIYIKDCSKYGTFISKKNGPKNKVHELPNKEAVLEDGDHICFGTGTATYRFCFVPLVFYICCSDHFQMDQSLQDRISSIGARVSHTLNEECTHALVDQVKPVNLHLLDAIIAKMPVILSTWVEFIAGKNICNEFPSFSSYFPLLTVEGTSVHIGDPKIREKCLSGYTLLLEPAHMYKSGYQFQSLLEVGGAIVILVGDFSQVSDYGDDNHVIYVIPGGHAHKSDHLKKLTSLSRINEMDILCAVLRGQLDPSTLLSPCVLVSLSCSTDASTDETVVADSEAEDETATSIHVNATVEKGVIGHDDTTKSISKEKISLDVATTSINFYSAAVEEGTSNMTVRKAKDDESESRNSDIIYSQDLVVRHTNEPLGTIAVKDNGVPNFKCFRKVQTQSGNSFDNLVPFSKYPYNDSDYGNEDVVEAVKEEKKRKQVEAIAEDLFNNEKSKRRGTAGSLRSILT* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00550 526 SUPERFAMILY SMAD/FHA domain 16 131 IPR008984 GO:0005515
Pte8g00550 526 Pfam FHA domain 25 112 IPR000253 GO:0005515
Pte8g00550 526 SUPERFAMILY BRCT domain 125 195 IPR036420 -
Pte8g00550 526 CDD FHA_NBN 3 122 - -
Pte8g00550 526 CDD BRCT 127 192 - -
Pte8g00550 526 PANTHER NIBRIN-RELATED 396 513 IPR040227 GO:0006302|GO:0007095|GO:0030870
Pte8g00550 526 Gene3D - 2 125 - -
Pte8g00550 526 ProSiteProfiles Forkhead-associated (FHA) domain profile. 25 88 IPR000253 GO:0005515
Pte8g00550 526 FunFam Nibrin 2 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00550 Pte-Chr8 27054818 27061053 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00550 K10867 - qsa:O6P43_020492 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00550 8 27054818 27061053 Pte8g00550 8 27054818 27061053 RCT