Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte8g00019 ATGGTTACAGACCAAGAGATAGCTGAGGCCGTACAGTCTCTCATACAGGAATCCAACCCCAAAACCTTCACCACCTTAAACGGCGTCGTACAAGAGCTGCAGGCTAAGCTCGGTGAGGATCTTACTCACAAGGTCGACCTCATCCGCAACCAGATCAACCTCTTGTATTCCACCACCTACACCCAACCACAGCAACCGCAATCGCAACAACTTCCTTCAAATGACCGTTTTGCCCTTCAACAAAACGCTAATGTCCAACCTCAGGCTCCAGCACCTCCCCCAGTCGCGTCTCCTGCTTTCCAGATCTTCACTTGTCATCCTGTTACAGCTGATGTCACCCCAAGCTCCACTGCTCCCGGTGCTTCTGTGGACGGTGCTGCTGTCCTAACTGGCGCAGAACCACCCAAGACCAGTGCTCCGGTGAAGGCTAAGAGAAGAGGTGGCCCTGGTGGTCTCAATAAACTATGTGCTGTGTCACCCCCACTTCAAGTCATCGTTGGCCACGCAGAAATGCCAAGGACTGAGATTGTGAAGCAATTATGGGCTTACATTAGGAAAAATAATCTCCAAGATCCTGGAAATAAAAGGAAAATTATATGCAATGATGAGCTGCGTGTGGTATTTGAGACTGACTCCACCGACATGTTTAAGATGAACAAGTTGCTAGCTAAACATATCTCCCCGCTTGAACCAACCAAACAGTCAGCAAAGAAGCAGAAGACTGAGGTGGCTGAACTTGAGTTTGGATCAAAGAGCACTGAAGCTGGTCCTTTTATTATAGTATCTGAACCTCTTGCTAAATTTCTTGGTGTTGAAGGGGAGATGCTTCAATCAGAAGTTTTGAGAAGAATTTGGGAGTATGTCAAGATCAATCAGCTGGAGGATCCCTTAAACCCAATGGCAATAATGTGCGATGCAAAGCTTCAAGAACTCTTTGGTTGCGAAAGTATATCAGCATTAGGGATACCAGAAGTTTTGGCACGCAACCATATTGTCAGGAGATCGTGA 1008 0.4712 MVTDQEIAEAVQSLIQESNPKTFTTLNGVVQELQAKLGEDLTHKVDLIRNQINLLYSTTYTQPQQPQSQQLPSNDRFALQQNANVQPQAPAPPPVASPAFQIFTCHPVTADVTPSSTAPGASVDGAAVLTGAEPPKTSAPVKAKRRGGPGGLNKLCAVSPPLQVIVGHAEMPRTEIVKQLWAYIRKNNLQDPGNKRKIICNDELRVVFETDSTDMFKMNKLLAKHISPLEPTKQSAKKQKTEVAELEFGSKSTEAGPFIIVSEPLAKFLGVEGEMLQSEVLRRIWEYVKINQLEDPLNPMAIMCDAKLQELFGCESISALGIPEVLARNHIVRRS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte8g00019 335 Gene3D SWIB/MDM2 domain 251 335 IPR036885 -
Pte8g00019 335 Gene3D SWIB/MDM2 domain 147 237 IPR036885 -
Pte8g00019 335 SUPERFAMILY SWIB/MDM2 domain 256 328 IPR036885 -
Pte8g00019 335 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 57 IPR014876 -
Pte8g00019 335 SMART swib_2 152 231 IPR019835 -
Pte8g00019 335 SMART swib_2 255 335 IPR019835 -
Pte8g00019 335 ProSiteProfiles SWIB/MDM2 domain profile. 254 332 IPR003121 -
Pte8g00019 335 ProSiteProfiles SWIB/MDM2 domain profile. 151 228 IPR003121 -
Pte8g00019 335 CDD SWIB-MDM2_like 261 331 - -
Pte8g00019 335 Pfam DEK C terminal domain 2 54 IPR014876 -
Pte8g00019 335 Gene3D - 1 58 - -
Pte8g00019 335 SUPERFAMILY SWIB/MDM2 domain 145 232 IPR036885 -
Pte8g00019 335 CDD SWIB-MDM2_like 156 226 - -
Pte8g00019 335 Pfam SWIB/MDM2 domain 155 226 IPR003121 -
Pte8g00019 335 Pfam SWIB/MDM2 domain 261 327 IPR003121 -
Pte8g00019 335 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 237 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte8g00019 Pte-Chr8 495936 500187 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pte8g00019 SWIB 3.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte8g00019 - - qsa:O6P43_013629 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte8g00019 8 495936 500187 Pte8g00019 8 495936 500187 RCT