Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02189 ATGGGAAAAGGAATCAATGGTTTTTCAAGTTTTTCGACTATTGCTTTTTGGAATATGAAAGTGAGAGATGCTGTGAATGAAGGGCTTGCCGAGAAGGCTTTGATATTGTTTAAACAAATGAAGCAAAATGGTTTACAGCCAAACGGCTTGACCTTCTCTTTTGTACTCAAAGCGTGCGCGAAACTCACTAATCTCCATAATGCCAAAATTATTCACTGCCATGTGCTTAAATCGTCATTCCAAGGAAATATCCATGTACAAACAGCTACTATTGACTCATACGTCAAATGCCATCAGTTGCATCATGCTCACGATGTGTTTGTTCGAATGCTCAGAAGGGATGTCCCTTCGTGGAATGCAATGCTTATGGGGTTCGCTCAATTGGATTCCCTCGAAAATGCGTTGCATCTTTTACGTGAGATGAGACTTGCTGGGATTCAGCCTGATGCTGTCACTCTTTTGGCTTTGATTCGTGCCATTCTATGGACAAAAAATGTGAAATTGTTGAACGTGATCCGTTCTTTTAGCATAAGAACTGGCGTCGATGTGGATATATCTGTTGCTAACACCTTTGTTTCTGCATATGCCAAATGTGGAAAGTTGGTGTTAGCAGAGTTAGTATTCGATGAAATTGACTGTGATCTTAAATCTGTTGTTTCCTGGAATTCTATGGTAGCAGCATATGCAGATTCTGAGATGCATATTGCTGCTTTAAGCTCATACAAAAAGATGTTGCTTGGTGGGTTTAAGCCAGACATAAGCACCGTCATCAATTTGTTGTCATCTTGTGCGCAACCTGAAGCGCTATTTAATGGTTTACTGGTTCACTCTCACGGAGTTCTGTTGGGATGTGATGAGGATATACATGTGGTGAATACTCTTATATCTATGTACTCCAAGTGCGGTGATGTTGATTCTGCTCGATTTTTATTTGATAGCATGACAGATAGAACTTGTGTATCGTGGACAACCATGATTAGTGGGTATGCTGAGAAAGGAGTTATGAGCCAAGCACTAACGTTGTTTCATGCTATGGAAGCAAGTGGCCAGAAACCGGACTTGGTTACTACACTTTCATTTATCTCGGGTTGTGGACGAACAGGGTCGCTTGAGCTTGGGAAATGGATCGATAATTACTCCTTTGTGAATGGTTTGAAAGATAATGTTGTAGTTCGCAATGCGCTTATTGACATGTATGCAAAATGCGGAAGCATAAATGACGCTCGTGAAATTTTCTATGCAACAGCTAATAGAACAGTTGTGTCGTGGACAACTATGATCATGGCTTGTTCTTTGAATGGAGAATTTAAGGAAGCTCTAGACCTCTTCTCCAAGATGGATTTGGAAATGGAACCAAATCAAATAACTTTTCTAGCTGTTCTTCAAGCTTGTGCTCACGGAGGTTTACTCGAGAAAGGATTGGAGCACTTCAATCTGATGAGGAAGAAGTATAATTTAAGCCCTGGTATTGATCATTATTCCTGCATGGTTGATCTCCTTGGACGCAGGGGTCGCCTAAAGGAAGCCTTGGAGCTTATCAAGAACATGGCTGTCACACCTGATACTGGCATTTGGAGTGCACTGCTTGCAGCTTGCAAGCTTCACCATAACATTGACATAGGCAAGTACGTGTCTCAATGTCTTTTTGAATTGGAGCCCAAGGTAGCAGTTCCGTATGTGGAAATGGCCAATATATATGCATCTGCTGGAGTTTGGGATGGAGTCGCTGCAATAAGAACAAAGATGAGATGTCTGCAAGTCAGAAAATGCCCAGGCCAAAGCATTCTTCAATTGAATGAGTCATCCCATTCATTTACAGTTGAAGACAGAGATCATCCAGAAGGCTTGCACATATATGATACTTTAGATAGTTTAATGTCGCTTTCAAAGCGACAACACTTGCATTGTTCATGGGAGGATTTTGACACGTTCTGTATATCATGTTGA 1947 0.4119 MGKGINGFSSFSTIAFWNMKVRDAVNEGLAEKALILFKQMKQNGLQPNGLTFSFVLKACAKLTNLHNAKIIHCHVLKSSFQGNIHVQTATIDSYVKCHQLHHAHDVFVRMLRRDVPSWNAMLMGFAQLDSLENALHLLREMRLAGIQPDAVTLLALIRAILWTKNVKLLNVIRSFSIRTGVDVDISVANTFVSAYAKCGKLVLAELVFDEIDCDLKSVVSWNSMVAAYADSEMHIAALSSYKKMLLGGFKPDISTVINLLSSCAQPEALFNGLLVHSHGVLLGCDEDIHVVNTLISMYSKCGDVDSARFLFDSMTDRTCVSWTTMISGYAEKGVMSQALTLFHAMEASGQKPDLVTTLSFISGCGRTGSLELGKWIDNYSFVNGLKDNVVVRNALIDMYAKCGSINDAREIFYATANRTVVSWTTMIMACSLNGEFKEALDLFSKMDLEMEPNQITFLAVLQACAHGGLLEKGLEHFNLMRKKYNLSPGIDHYSCMVDLLGRRGRLKEALELIKNMAVTPDTGIWSALLAACKLHHNIDIGKYVSQCLFELEPKVAVPYVEMANIYASAGVWDGVAAIRTKMRCLQVRKCPGQSILQLNESSHSFTVEDRDHPEGLHIYDTLDSLMSLSKRQHLHCSWEDFDTFCISC* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02189 648 Pfam E motif 535 596 IPR046848 -
Pte3g02189 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 13 47 IPR002885 -
Pte3g02189 648 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 14 175 - -
Pte3g02189 648 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 390 615 - -
Pte3g02189 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Pte3g02189 648 Gene3D Tetratricopeptide repeat domain 269 380 IPR011990 GO:0005515
Pte3g02189 648 NCBIfam pentatricopeptide repeat 320 353 IPR002885 -
Pte3g02189 648 NCBIfam pentatricopeptide repeat 421 446 IPR002885 -
Pte3g02189 648 NCBIfam pentatricopeptide repeat 291 319 IPR002885 -
Pte3g02189 648 NCBIfam pentatricopeptide repeat 117 150 IPR002885 -
Pte3g02189 648 Gene3D Tetratricopeptide repeat domain 165 268 IPR011990 GO:0005515
Pte3g02189 648 Gene3D Tetratricopeptide repeat domain 73 164 IPR011990 GO:0005515
Pte3g02189 648 Gene3D Tetratricopeptide repeat domain 11 72 IPR011990 GO:0005515
Pte3g02189 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 317 IPR002885 -
Pte3g02189 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Pte3g02189 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Pte3g02189 648 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 359 629 IPR046960 GO:0003723|GO:0009451
Pte3g02189 648 Pfam PPR repeat 219 248 IPR002885 -
Pte3g02189 648 Pfam PPR repeat 91 114 IPR002885 -
Pte3g02189 648 Pfam PPR repeat 492 516 IPR002885 -
Pte3g02189 648 Pfam PPR repeat 117 146 IPR002885 -
Pte3g02189 648 Pfam PPR repeat 393 412 IPR002885 -
Pte3g02189 648 Pfam PPR repeat 291 317 IPR002885 -
Pte3g02189 648 Pfam PPR repeat 189 211 IPR002885 -
Pte3g02189 648 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 270 374 - -
Pte3g02189 648 SUPERFAMILY TPR-like 288 569 IPR011990 GO:0005515
Pte3g02189 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 449 IPR002885 -
Pte3g02189 648 Pfam PPR repeat family 419 465 IPR002885 -
Pte3g02189 648 Pfam PPR repeat family 25 61 IPR002885 -
Pte3g02189 648 Pfam PPR repeat family 320 364 IPR002885 -
Pte3g02189 648 Gene3D Tetratricopeptide repeat domain 393 610 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02189 Pte-Chr3 39109669 39111615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02189 26 631 Glycoside Hydrolase AT3G49170 30.782 7.10e-95 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02189 - - gmx:100796644 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g02189 3 39109669 39111615 Pte3g02189 3 39109669 39111615 RCT