Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02093 ATGGCTCCGGTTTCTGCTCTTGCGAAATACAAGCTTGTATTTTTGGGCGATCAGTCTGTAGGCAAAACCAGCATCATTACTCGCTTCATGTACGACAAGTTTGACAATACTTATCAGGCTACAATCGGTATTGATTTCCTTTCGAAGACAATGTACTTGGAAGACAGAACTGTAAGGCTGCAGCTCTGGGATACAGCTGGACAAGAGCGTTTCAGGAGTCTGATCCCGAGCTACATTAGGGATTCATCTGTTGCAGTTATCGTATATGATGTCGCAAGCAGACAGTCGTTTCTAAATACTTCAAAGTGGATTGAAGAGGTCAGAACTGAACGTGGAAGTGATGTTATCATTGTTCTTGTTGGAAACAAAACTGATCTTGTGGACAAAAGGCAAGTTTCTATAGAAGAAGGAGAGGCTAAAGCTCATCAGCTCAATGTTATGTTTATCGAAACTAGTGCTAAGGCTGGTTTTAATATAAAGGCACTCTTTCGGAAAATTGCCGCAGCCTTGCCGGGAATGGAAACCCTTTCCTCAACAAAGCAAGAAGACATGGTCGATGTCAACCTTAAAACATCTAATGCAAGTGCATCACAGTCACAGCAGCAGTCCGGAGGATGTGCTTGTTGA 627 0.429 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGEAKAHQLNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKTSNASASQSQQQSGGCAC* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02093 208 PANTHER RAS-RELATED PROTEIN RAB 10 187 - -
Pte3g02093 208 ProSiteProfiles small GTPase Rab1 family profile. 5 208 - -
Pte3g02093 208 SMART ran_sub_2 15 208 - -
Pte3g02093 208 CDD Rab6 10 170 - -
Pte3g02093 208 Gene3D - 6 205 IPR027417 -
Pte3g02093 208 FunFam Probable Ras-related protein Rab-6A 6 204 - -
Pte3g02093 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 187 IPR027417 -
Pte3g02093 208 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Pte3g02093 208 SMART rab_sub_5 10 173 - -
Pte3g02093 208 SMART ras_sub_4 7 173 - -
Pte3g02093 208 PRINTS Transforming protein P21 ras signature 113 126 - -
Pte3g02093 208 PRINTS Transforming protein P21 ras signature 10 31 - -
Pte3g02093 208 PRINTS Transforming protein P21 ras signature 33 49 - -
Pte3g02093 208 PRINTS Transforming protein P21 ras signature 51 73 - -
Pte3g02093 208 PRINTS Transforming protein P21 ras signature 148 170 - -
Pte3g02093 208 ProSiteProfiles small GTPase Ras family profile. 5 208 IPR001806 GO:0003924|GO:0005525
Pte3g02093 208 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Pte3g02093 208 NCBIfam small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Pte3g02093 208 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02093 Pte-Chr3 35708439 35712924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02093 10 168 EF-hand Containing Proteins AT3G63150 23.636 3.27e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02093 K07893 - cpap:110814766 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g02093 3 35708439 35712924 Pte3g02093 3 35708439 35712924 RCT