Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte3g01935 | ATGCCTCGCCGCCACAGGGACGACGAAGAGGAGGAGGAGGAGGAAGATCAGGAACAGCTTCTTGATGACGAGGAAGTCGAGGAGGAAGAGGAGGAGTACGTGGAAGGCGGGAGAGGTGGAAAAGGAGGGTCGAATGGGAAGAGGACGAGATCTGATTTCTTCGAGGAGTTCGCTGAAGAGGATAGTGAGGAAGAGGAGGACGATGACGATGATTACGGTGGTCGGAAGCGCAAGCGGAGAGCACATAACCCTTTCTTCGATGAGGAAGCAGAAGTGGATGAGGATGAGGAGGAAGAGGAGGGTGATGCTGAAGATGACGATTTTTTCATCGACAATGGAGCTGATTTACCGGATGAAGATGATGGTAGAAGGTTACCTCGCCGCTCGTTGCTTGAAGATCAGGAAGACGTCGAAGATCTTGAAAGAAAGATTCAAGAAAGATATTCTAAGTCTCATTACACAGCATATAATGAAGAAACCACTGAGGTTGACCAGCAAGCACTTTTACCGTCCGTCAGAGACCCAAAGTTATGGATGGTGAAATGTGCGATTGGTCGTGAGCGAGAAGTAGCTGTCTGCCTTATGCAAAAGTCCATTGACAAAGGACCAGAATTGCAAATTAGGTCTGTGATTGCTCTTGATCATCTAAAAAATTATATTTACGTTGAAGCTGACAAAGAGGCCCATGTGAGGGAGGCATGCAAAGGCATGCGCAACATCTATGCCCAGAAGATAACACTGGTGCCCATTAAAGAAATGACTGATGTTCTCTCAGTTGAGAGCAAAACAATTGATCTTTCTAGGAATACTTGGGTCAGAATGAAGCTTGGAACTTACAAAGGAGACCTGGCCCAAGTAGTGGATGTGGACAATGTGCGTCAAAAAGTCACTGTAAAACTAATTCCAAGAATAGACTTGCAGGCTCTTGCCAGTAAACTGGAAGGTAGAGAAGTTGTGAAAAAGAAGGCATTCACTCCTCCTCCGCGGTTGATTAATGTTGAAGAGGCTAGGGAATTGCATATTCGTGTTGAACGTAGACGAGATCCTTATACTGGGGATTACTTTCAAAATATTGGGGGAATGCTATTTAAAGATGGTTTTTTATATAAACCTGTATCAATCAAATCGGTTAGCACTCAGAATATAAAACCAACGTTTGATGAACTCGAAAGATTTCGATCACCAGGAGAGAGTGCCGATGGCAATCTTGGCAGTCTGTCAACATTATTTGCAAATAGAAAGAAAGGGCACTTCGTGAAGGGTGATGCAGTAATTGTTGTCAAGGGAGATCTGAAGAACTTGAAGGGCTGGGTGGAGAAAGTTGATGAAGAAAATGTTCACATACGACCTGAAATCAAGGGTCTCCCAAAAACACTTGCTGTGAATGAGAAAGAGCTCTGCAAGTACTTCGAACCTGGCAATCATGTTAAGGTTATTTCCGGTACGCAAGAAGGTGCTACTGGTATGGTGGTGAAGGTGGAGCAGCATGTTCTCATCATATTATCTGATACTACTAAGGAGCATTTACGTGTATTTGCTGATGATGTTGTGGAGAGTTCTGAAGTGACTTCTGGTGTTACGAAAATTGGAGATTATGAGCTTCATGATCTTGTTCTTCTAGATAATCTGAGCTTTGGTGTCATAATACGTGTGGAGAGCGAGGCTTTTCATGTGCTCAAGGGAGTCCCTGACAGACCTGAGGTGACCCTGATTAAGTTGAGAGAGATCAAAACCAAGATAGAGAAGAAGTTCAGTTTGCAAGATCGGTTTAAGAATACCGTATCAGTAAAAGATGTCGTCCGGATTGTTGAAGGTCCCTCCAAAGGGAAACAAGGTCCTGTGGAACACATATACAGAGGAGTCCTGTTCATATATGATCGCCATCACCTTGAGCATGCGGGCTTTATATGCACTAAAGCACAATCATGTGTTCTGGTGGGAGGATCACGCTCAGTTGGTGATAGAAATGGTGATGCATATTCAAGATTCTCAAGTCTTAGAACACCGCCTCGTGTTCCCCAGTCTCCGAAGAGGTTCTCACGGGGAGGGCCCCCAGTTGGTTCTGGTGGGAGGCATAGGGGTGGAAGAGGGCATGATGGTTTGGTTGGAACTACAGTTAAAATACGCCAGGGTCCTTTTAAGGGCTATCGCGGGCGTGTTGTGGAATTGAAAGGGACCTTGGTTCGGGTTGAATTAGAGTCTCAAATGAAGGTCGTAACAGTTGATCGGAATCATATATCTGATAATATCACTGTTTCGACACCATACCGTGACACTAGATATGGAATGGGAAGTGAGACTCCCATGCATCCTTCTCGAACACCTATGCATCCATATATGACTCCTATGAGAGATCCTGGAGCAACACCTATTCATAGTGGGATGAGAACACCAATGATTGACCGTGCTTGGAATCCTTCTGCACCAATGAGTCCTCCAAGGGATAATTGGGAAGAGGGGAACCCAGGCTCTTGGGGAACTAGTCCACATTACCAGCCTGCAAGTCCACACTCTCGGGCATATGAAGCACCTACTCCTGGCTCTGGCTGGGCTGCTACTCCTGGTGGTAATTACAGTGAGGCTGGAACACCAAGGGATAGTGGTTCTGCATATGCCAATGCTCCAAGCCCATACTTACCCTCAACTCCTGGGGGACAGCCTATGACACCAAATTCAGCATCCTATCTTCCAGGGACTCCTGGTGGGCAGCCGATGACTCCGGGAGGTGGTCTGGATATGATGTCTCCAGTGCTAGGTGGAGACAGTGATGGACCATGGTACATGCCGGATATCTTCGTTACTGTAGGTAGAGCTGGTGAGGAACCCAGTGTGGGAGTTGTGAGAGAAGTACTTCCGGATGGATCTTGCCGAGTAGCTCTGGGGACGTCGGGCCATGGTGAGACTGTGACTGCCCTTCCAAACGAGATGGAAGCCGTAGTACCAAGGAAATCGGACAAAATAAAGATAATGGGAGGTTCATTGCGTGGTGCCACAGGAAAGTTGATTGGTGTGGATGGCACCGACGGGATAGTAAAGGTGGATGATACCTTGGATGTCAAGATTTTAGATTTGGTCATTTTAGCAAAATTAGCTCAACCCTGA | 3102 | 0.4632 | MPRRHRDDEEEEEEEDQEQLLDDEEVEEEEEEYVEGGRGGKGGSNGKRTRSDFFEEFAEEDSEEEEDDDDDYGGRKRKRRAHNPFFDEEAEVDEDEEEEEGDAEDDDFFIDNGADLPDEDDGRRLPRRSLLEDQEDVEDLERKIQERYSKSHYTAYNEETTEVDQQALLPSVRDPKLWMVKCAIGREREVAVCLMQKSIDKGPELQIRSVIALDHLKNYIYVEADKEAHVREACKGMRNIYAQKITLVPIKEMTDVLSVESKTIDLSRNTWVRMKLGTYKGDLAQVVDVDNVRQKVTVKLIPRIDLQALASKLEGREVVKKKAFTPPPRLINVEEARELHIRVERRRDPYTGDYFQNIGGMLFKDGFLYKPVSIKSVSTQNIKPTFDELERFRSPGESADGNLGSLSTLFANRKKGHFVKGDAVIVVKGDLKNLKGWVEKVDEENVHIRPEIKGLPKTLAVNEKELCKYFEPGNHVKVISGTQEGATGMVVKVEQHVLIILSDTTKEHLRVFADDVVESSEVTSGVTKIGDYELHDLVLLDNLSFGVIIRVESEAFHVLKGVPDRPEVTLIKLREIKTKIEKKFSLQDRFKNTVSVKDVVRIVEGPSKGKQGPVEHIYRGVLFIYDRHHLEHAGFICTKAQSCVLVGGSRSVGDRNGDAYSRFSSLRTPPRVPQSPKRFSRGGPPVGSGGRHRGGRGHDGLVGTTVKIRQGPFKGYRGRVVELKGTLVRVELESQMKVVTVDRNHISDNITVSTPYRDTRYGMGSETPMHPSRTPMHPYMTPMRDPGATPIHSGMRTPMIDRAWNPSAPMSPPRDNWEEGNPGSWGTSPHYQPASPHSRAYEAPTPGSGWAATPGGNYSEAGTPRDSGSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGGGLDMMSPVLGGDSDGPWYMPDIFVTVGRAGEEPSVGVVREVLPDGSCRVALGTSGHGETVTALPNEMEAVVPRKSDKIKIMGGSLRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP* | 1034 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte3g01935 | 1033 | PIRSF | Spt5 | 2 | 1033 | IPR017071 | GO:0006357|GO:0032784 | |
| Pte3g01935 | 1033 | FunFam | Transcription elongation factor SPT5 | 472 | 521 | - | - | |
| Pte3g01935 | 1033 | Gene3D | - | 412 | 469 | IPR014722 | - | |
| Pte3g01935 | 1033 | SUPERFAMILY | Translation proteins SH3-like domain | 461 | 520 | IPR008991 | - | |
| Pte3g01935 | 1033 | Gene3D | - | 472 | 521 | IPR014722 | - | |
| Pte3g01935 | 1033 | PANTHER | SUPPRESSOR OF TY 5 | 42 | 1010 | IPR039659 | GO:0006357|GO:0032784 | |
| Pte3g01935 | 1033 | MobiDBLite | consensus disorder prediction | 658 | 703 | - | - | |
| Pte3g01935 | 1033 | MobiDBLite | consensus disorder prediction | 799 | 892 | - | - | |
| Pte3g01935 | 1033 | CDD | KOW_Spt5_6 | 974 | 1031 | IPR041980 | - | |
| Pte3g01935 | 1033 | SMART | nusgn_4 | 174 | 260 | IPR006645 | GO:0140673 | |
| Pte3g01935 | 1033 | Pfam | Early transcription elongation factor of RNA pol II, NGN section | 176 | 257 | IPR005100 | - | |
| Pte3g01935 | 1033 | MobiDBLite | consensus disorder prediction | 71 | 87 | - | - | |
| Pte3g01935 | 1033 | CDD | NGN_Euk | 176 | 258 | IPR039385 | - | |
| Pte3g01935 | 1033 | Gene3D | - | 156 | 258 | IPR036735 | GO:0006355 | |
| Pte3g01935 | 1033 | CDD | KOW_Spt5_3 | 469 | 519 | IPR041976 | - | |
| Pte3g01935 | 1033 | FunFam | Transcription elongation factor SPT5 | 156 | 258 | - | - | |
| Pte3g01935 | 1033 | SMART | kow_9 | 265 | 292 | IPR005824 | - | |
| Pte3g01935 | 1033 | SMART | kow_9 | 469 | 496 | IPR005824 | - | |
| Pte3g01935 | 1033 | SMART | kow_9 | 980 | 1007 | IPR005824 | - | |
| Pte3g01935 | 1033 | SMART | kow_9 | 417 | 444 | IPR005824 | - | |
| Pte3g01935 | 1033 | SMART | kow_9 | 593 | 620 | IPR005824 | - | |
| Pte3g01935 | 1033 | SMART | kow_9 | 699 | 726 | IPR005824 | - | |
| Pte3g01935 | 1033 | Gene3D | - | 265 | 307 | IPR014722 | - | |
| Pte3g01935 | 1033 | MobiDBLite | consensus disorder prediction | 56 | 70 | - | - | |
| Pte3g01935 | 1033 | FunFam | Transcription elongation factor SPT5 | 686 | 749 | - | - | |
| Pte3g01935 | 1033 | FunFam | Transcription elongation factor SPT5 | 412 | 469 | - | - | |
| Pte3g01935 | 1033 | CDD | KOW_Spt5_5 | 701 | 747 | IPR041978 | - | |
| Pte3g01935 | 1033 | Pfam | KOW motif | 472 | 513 | IPR005824 | - | |
| Pte3g01935 | 1033 | MobiDBLite | consensus disorder prediction | 1 | 130 | - | - | |
| Pte3g01935 | 1033 | ProSitePatterns | Ribosomal protein L24 signature. | 421 | 438 | IPR005825 | GO:0003735|GO:0005840|GO:0006412 | |
| Pte3g01935 | 1033 | Gene3D | - | 685 | 749 | IPR014722 | - | |
| Pte3g01935 | 1033 | CDD | KOW_Spt5_4 | 597 | 639 | IPR041977 | - | |
| Pte3g01935 | 1033 | MobiDBLite | consensus disorder prediction | 116 | 130 | - | - | |
| Pte3g01935 | 1033 | CDD | KOW_Spt5_1 | 269 | 306 | IPR041973 | - | |
| Pte3g01935 | 1033 | MobiDBLite | consensus disorder prediction | 88 | 115 | - | - | |
| Pte3g01935 | 1033 | FunFam | Transcription elongation factor SPT5 | 265 | 307 | - | - | |
| Pte3g01935 | 1033 | Pfam | Spt5 transcription elongation factor, acidic N-terminal | 85 | 170 | IPR022581 | - | |
| Pte3g01935 | 1033 | MobiDBLite | consensus disorder prediction | 860 | 876 | - | - | |
| Pte3g01935 | 1033 | Coils | Coil | 7 | 30 | - | - | |
| Pte3g01935 | 1033 | MobiDBLite | consensus disorder prediction | 9 | 33 | - | - | |
| Pte3g01935 | 1033 | CDD | KOW_Spt5_2 | 418 | 468 | IPR041975 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte3g01935 | Pte-Chr3 | 31051658 | 31057407 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte3g01935 | K15172 | - | qsa:O6P43_015077 | 1592.79 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pte3g01935 | 3 | 31051658 | 31057407 | Pte3g01935 | 3 | 31051658 | 31057407 | RCT |