LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte3g01854	ATGCCGGCCCTAACTTGTTGCGTGGATGCTGCTGTTGTACCTCCCGGCTACGCTTTTGCTGGGGACAGCTCTCTTCTGCCGCCGGTCACATTTCCCGGCGTACTTCCGGCGATTATGGATACTACTTCCGCCGCCTATGAGGATTCCCGTTGGTCTTCATCGCTGTCAGCTGCGCTTTATAAGTTGGATGGATGGGGTGCACCCTATTTCTCTGTCAACAACTCGGGTAATATTTCCGTCCGTCCACACGGCAAGGACACACTTGCCCATCAGGAGATTGATTTGTCGAAGATTGTGAAGAAAGCCTCAGATCCAAAGTCCATTGGTGGACTGGGCTTGCAGCTTCCTCTTGTCGTCAGGTTTCCTGACATTCTCAAGAACAGGCTTGAATCTATCAACTCGGCCTTCGAGTATGCTGTTGGATCTCATGATTACGAGTCTCATTACCAAGGTGTATACCCTGTAAAATGCAACCAAGATAGGTTCGTTGTGGAGGACATAGTGAATTTCGGTTCCCCATTCAGGTTCGGCTTGGAGGCGGGTTCAAAGCCCGAGCTTCTTCTGGCTATGAGCTGTTTGTGCAAAGGTAACCCTGATGCCCTTCTGGTTTGCAATGGTTTTAAAGATGCCGAGTATATCTCGTTAGCTTTGATTGCGAGGAAACTTGCTTTGAACACTGTTATCGTTCTGGAGCAAGACGAAGAACTAGATTTGGTTATCGAGTGGGGGAAAAAGCTTGGCATTCGTCCTGTGATTGGTCTACGGGCGAAGCTTAGGACAAAACATTCTGGACATTTCGGTTCAACTTCAGGTGAGAAAGGAAAATTTGGACTGACCACTACTCAGATTTTACGTGTAGTGAGGAAGCTTGAGCAAATGGGTATGCTCGATTGCTTGCAGTTGCTACATTTTCATATCGGTTCTCAGATCCCTTCTACCTCACTACTAGCTAATGGTGTGGGTGAAGCTGCACAGATCTACTGTGAATTGGTTCGGCTTGGAGCCAATATGCAAGTCATTGACATTGGAGGCGGTCTGGGCATCGATTATGATGGTTCTAAGTCTTGTGATTCTGATATATCCGTTGCGTATTCCCTTGAAGAATATGCTGCCACTGTTGTTCAAGCTGTTAAGTATGTATGCGATCGTGCTACCGTGAAGCATCCAATTCTTTGCAGCGAAAGTGGTCGAGCTATAGTGTCTCATCATTCTGTGTTAATTTTTGAGGCTGTTTCTGCTAGTGCTTACGAATCCCCAGCATTGTCTTCAACGGGGCTTCAGTATTTGGTAGAAGGGCTCTCAGTCGCTGCTCTTTCTGATTACAAGAACTTAACCGCTGCAGCAATTAAGGGTGACTATGATACATGTTTGTTGTACACTGATCAATTGAAGCAACGTTGTGTTGATGAGTTCAAGGAAGGAACATTGGGTATCGAACAACTCGCTGCTGTTGATGGGTTGTGTGATTTGGTTTGTAAAGCAGTAGGGGTAGCGGATCCTGTTCGAACATACCATGTCAACCTTTCTGTGTTCACTTCAATTCCTGATTTCTGGGGTATTGGTCAGCTTTTTCCTATTGTTCCTATTCATCGTCTGGATGAGCGACCATCAGCGAGGGGTATCTTGTCTGATTTAACTTGTGATAGCGATGGGAAGATTGACAAGTTCATTGGCGGTGAGTCAAGTTTGCCACTGCATGAAATTGAGGGAGGCGGCGGCGGAAGTTACTACTTGGGAATGTTTTTGGGTGGGGCTTACGAGGAGGCACTCGGTGGAGTTCACAATCTGTTTGGTGGCCCTAGCGTTGTTAGGGTACTGCAGAGTGACGGTCCGCATGGCTTCGCAGTAACGCGAGCAGTGCCAGGTCCGTCTTGCAGTGATGTCCTACGTGTGATGCAGCATGAGCCTGAACTCATGTTCCAGACACTCAAGCACCGTGCAGAGGAGTATGGACATTTCGTTGATGATGATGATGGTATGGCGAACATTTCCTCTCTGGCTAGCAGACTCAGCTGCTCCTTTAATAACATGCCATATCTGATGGCAGCTTCATCTTGTTGCTTGACAGCCATGAACAATAATGGTTTCTACTACTGCAGCACTGATGATTTCAACAGTGTTGCTACCGCAGATTCAGCTGCTGGAGAAGATGAGCACTGGTCTTACTGCTATGCTTGA	2178	0.4725	MPALTCCVDAAVVPPGYAFAGDSSLLPPVTFPGVLPAIMDTTSAAYEDSRWSSSLSAALYKLDGWGAPYFSVNNSGNISVRPHGKDTLAHQEIDLSKIVKKASDPKSIGGLGLQLPLVVRFPDILKNRLESINSAFEYAVGSHDYESHYQGVYPVKCNQDRFVVEDIVNFGSPFRFGLEAGSKPELLLAMSCLCKGNPDALLVCNGFKDAEYISLALIARKLALNTVIVLEQDEELDLVIEWGKKLGIRPVIGLRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVRKLEQMGMLDCLQLLHFHIGSQIPSTSLLANGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSCDSDISVAYSLEEYAATVVQAVKYVCDRATVKHPILCSESGRAIVSHHSVLIFEAVSASAYESPALSSTGLQYLVEGLSVAALSDYKNLTAAAIKGDYDTCLLYTDQLKQRCVDEFKEGTLGIEQLAAVDGLCDLVCKAVGVADPVRTYHVNLSVFTSIPDFWGIGQLFPIVPIHRLDERPSARGILSDLTCDSDGKIDKFIGGESSLPLHEIEGGGGGSYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHGFAVTRAVPGPSCSDVLRVMQHEPELMFQTLKHRAEEYGHFVDDDDGMANISSLASRLSCSFNNMPYLMAASSCCLTAMNNNGFYYCSTDDFNSVATADSAAGEDEHWSYCYA*	726

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pte3g01854	725	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	60	606	IPR009006	GO:0003824
Pte3g01854	725	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	153	171	IPR022653	-
Pte3g01854	725	NCBIfam	arginine decarboxylase	51	680	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	PIRSF	ARGDC	37	680	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	PANTHER	ARGININE DECARBOXYLASE	2	681	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	144	401	IPR022644	GO:0003824
Pte3g01854	725	CDD	PLPDE_III_ADC	112	605	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	Gene3D	Alanine racemase	122	403	IPR029066	-
Pte3g01854	725	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	177	189	IPR000183	GO:0003824
Pte3g01854	725	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	391	410	IPR000183	GO:0003824
Pte3g01854	725	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	584	597	IPR000183	GO:0003824
Pte3g01854	725	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	153	171	IPR000183	GO:0003824
Pte3g01854	725	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	296	309	IPR000183	GO:0003824
Pte3g01854	725	FunFam	Biosynthetic arginine decarboxylase	122	403	-	-
Pte3g01854	725	Gene3D	-	420	500	-	-
Pte3g01854	725	PRINTS	Arginine decarboxylase signature	229	250	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	PRINTS	Arginine decarboxylase signature	253	275	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	PRINTS	Arginine decarboxylase signature	584	605	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	PRINTS	Arginine decarboxylase signature	507	528	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	PRINTS	Arginine decarboxylase signature	121	136	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	PRINTS	Arginine decarboxylase signature	145	159	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	PRINTS	Arginine decarboxylase signature	203	218	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	PRINTS	Arginine decarboxylase signature	532	557	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	PRINTS	Arginine decarboxylase signature	381	398	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Pte3g01854	725	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	334	347	IPR022657	-
Pte3g01854	725	SUPERFAMILY	PLP-binding barrel	121	403	IPR029066	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte3g01854	Pte-Chr3	29449381	29453516	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte3g01854	K01583		-	qsa:O6P43_002047	1206.82

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte3g01854	3	29449381	29453516	Pte3g01854	3	29449381	29453516	RCT