Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01841 ATGGCACAGGCTCAACCTGAGGAAAATATCACTGATCAAAGCCAAGAAAAAGATGGGAAGGAATCCAATGCAAGTGGCAGTAGTTCTTCTTTCAAATTCAATGCACAAGCCCCTGAATTTGTTCCAAGTTCTCATTCTCATGCACAGACCATACCCACACCACCACCAATTTCCAGTTATTACTACCCTGGCTTTCAGTTTCTTGGTGGGGCTGGTGCTTCTGATTGGCTTTACGTTGGAAACCAAGATCCTTCCTTTTTTATTGCAAATAGCGCCAATGTCACGCTTCCCAACTCCTCCAAGAACATTAACGCTGATGATCTTCAGCACAAAATCGTCAAGCAGGTTGAGTATCAATTTAGCGACATGAGTTTGCTTGCAAATGAAACTTTGATGAAGCACATGAATAAAAATCCTGAATCTTATGTTCCTATGTCTCTTGTTGCTTCCACTAAGAAGATCAAGTCTCTTGTTAGTAACGATCATATGCTTGTCCAAGCCTTGCGATCATCTTCAAAACTTGTTGTCAGTGATGATGGCAAGAAGGTCAAGCGTAGGCACCCTTTCACTGAGAAAGATATAGAGGATTTACAAAATCGCACAGTTGTAGCAGAGAATTTACCTGACGATCACTCTTATCCAAATCTTCAGAAGATATTTAGCGTCGTTGGCAGTGTAAAAACTATCAGAATATGCCACCCCCAGGAATCGAACACATCTCGTCCTAAAGGTGAAGTATTCATCAGCAACAAGCTCCATGCACTTGTGGAATATGAGAGTCCAGATGTAGCTGAGAAAGCGGTTGAAAAATTAAGTGATGAAAGGAACTGGAGGAAAGGACTGCGTGTAAGGGTCCTGCTTAGACGCTCGCCGAAATCTGTGCTGAAGAATAGGAAATTAGAATTTGACAGCATTATAGATGACAACGATCCACAGAGGCCGGAATTCGCTGAAGACTCCTTTCATCTAGGCAACACAGATTCCCTTGTGGAGAACAATGTAAAGTCTTTCATGGCTTCTTGCATCTCAAATTTCATATTACTAAACTTCAAGGCTTTTCTAAAAACATTCTTCGTTAGATCCTAG 1086 0.4153 MAQAQPEENITDQSQEKDGKESNASGSSSSFKFNAQAPEFVPSSHSHAQTIPTPPPISSYYYPGFQFLGGAGASDWLYVGNQDPSFFIANSANVTLPNSSKNINADDLQHKIVKQVEYQFSDMSLLANETLMKHMNKNPESYVPMSLVASTKKIKSLVSNDHMLVQALRSSSKLVVSDDGKKVKRRHPFTEKDIEDLQNRTVVAENLPDDHSYPNLQKIFSVVGSVKTIRICHPQESNTSRPKGEVFISNKLHALVEYESPDVAEKAVEKLSDERNWRKGLRVRVLLRRSPKSVLKNRKLEFDSIIDDNDPQRPEFAEDSFHLGNTDSLVENNVKSFMASCISNFILLNFKAFLKTFFVRS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01841 361 CDD RRM_La_like_plant 200 287 IPR034878 GO:0003723
Pte3g01841 361 Gene3D - 192 294 IPR012677 -
Pte3g01841 361 ProSiteProfiles La-type HTH domain profile. 102 193 IPR006630 -
Pte3g01841 361 Pfam Ataxin-2 C-terminal region 29 45 IPR009818 -
Pte3g01841 361 SUPERFAMILY "Winged helix" DNA-binding domain 104 189 IPR036390 -
Pte3g01841 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 290 IPR000504 GO:0003723
Pte3g01841 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 272 IPR000504 GO:0003723
Pte3g01841 361 Pfam La domain 112 169 IPR006630 -
Pte3g01841 361 PANTHER LUPUS LA PROTEIN-RELATED 18 304 IPR045180 -
Pte3g01841 361 MobiDBLite consensus disorder prediction 1 31 - -
Pte3g01841 361 PRINTS Lupus La protein signature 194 210 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pte3g01841 361 PRINTS Lupus La protein signature 115 132 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pte3g01841 361 PRINTS Lupus La protein signature 172 185 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pte3g01841 361 PRINTS Lupus La protein signature 141 156 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Pte3g01841 361 Gene3D - 104 191 IPR036388 -
Pte3g01841 361 SMART rrm1_1 201 286 IPR000504 GO:0003723
Pte3g01841 361 SUPERFAMILY RNA-binding domain, RBD 185 293 IPR035979 GO:0003676
Pte3g01841 361 SMART la 106 186 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01841 Pte-Chr3 29270578 29273259 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01841 K15191 - qsa:O6P43_031003 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01841 3 29270578 29273259 Pte3g01841 3 29270578 29273259 RCT