Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01728 ATGGAACCATTCTACAACGATCAACTGGAATATTATTATGAAGTCAACGACTTTGAAGATGATCCATTTGCTGATAATGAACCTGAGGCTAATACGGATTTCCATTTAATGGACTCCGATTTTGAAGATGAAATTGAATCGAGCAAGTCAAAGAGTGACACCTCTGCTTTAGAGGCAAGAAATGGAAAAGATATTCAGGGTATTCCATGGGAAAGGCTTAATTTTACAAGAGAAAAGTACCGTGAGGCTCGTTTAAAGCAGTACAAAAACTACGTGAATCTATCGCAGTCTCATGAAGAGCTTGAAAAGGAGTGCGTGGAGATCGAGAAGGGGAAAAACTTTTACGACTTCCAGTTCAATACAAGGCTTGTTAAATCAACGATCGTGCACTTTCAGTTGAGGAATTTGCTGTGTGCAACTTCAAAGCATGATGTGTACCTCATGCAAAACTATTCAGTGATGCATTGGTCATCCTTACTCAGGAGGGGCAAGGAGGTGCTGAATGTAGCTAAACCAATTGTTCCCATCTTGAAACGCCCTGGTATAATGGCCCAGCCCATCTCCAGAGTGCAGATTAGCGCAATGGATGTCAAAGAAAACTTGCTGGTGGCCGGTGGTTTTCAGGGTGAGCTTATTTGCAAGAACCTTTATCATGCTGGAGTAGACTTCTGCACGAAAATAACAACAGATGACAATGCCATAACCAACGCAGTGGACTTGTTCCGCAGTCATAATGGAACTCTAATGGTTATGACTGCCAACAATGATGCACAAGTGAGGGTTTTTGACGCAGAGCTATTTTCTTGCGTTGGTCATTTCTCATTTGATTGGTCTGTCAATAATACTTCTGTTAGTCCGGATGGCAAGTTGTTGGCAGTTCTAGGAGACAGTGCTGAGTGCTTGATCGCCGACACCGCCACTGGGAAGATTGCCAGTACACTTAGGGGGCACTTGGACTATTCATTTGCATCTGCTTGGCATCCTGACGGACGGATCTTGGCTACCGGCAACCAGGATACGACCTGTAGGTTGTGGGATATTAGAAATCTGTCACAATCCATGGCGGTTTTAAAGGGGAGGATGGGTGCAATCAGAGCGTTGAAGTTCACGTCGGATGGACATTTCTTGGCTATGGCAGAGCCTGCAGACTTCATTCACCTCTTTGACACGCACTCCGGGTATTCGCAGGCACAAGAAATCGATCTATTCGGTGAGATAGCTGGGATATCCTTCAGCCCCGACACAGAAGCCTTATTTGTTGCGATTGCTGATCGTACATATGGTAGCTTGCTGGAATTTAACAGAAGACGTCATAACCTATACCTGGACTCCATCTTTTAG 1341 0.4452 MEPFYNDQLEYYYEVNDFEDDPFADNEPEANTDFHLMDSDFEDEIESSKSKSDTSALEARNGKDIQGIPWERLNFTREKYREARLKQYKNYVNLSQSHEELEKECVEIEKGKNFYDFQFNTRLVKSTIVHFQLRNLLCATSKHDVYLMQNYSVMHWSSLLRRGKEVLNVAKPIVPILKRPGIMAQPISRVQISAMDVKENLLVAGGFQGELICKNLYHAGVDFCTKITTDDNAITNAVDLFRSHNGTLMVMTANNDAQVRVFDAELFSCVGHFSFDWSVNNTSVSPDGKLLAVLGDSAECLIADTATGKIASTLRGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSMAVLKGRMGAIRALKFTSDGHFLAMAEPADFIHLFDTHSGYSQAQEIDLFGEIAGISFSPDTEALFVAIADRTYGSLLEFNRRRHNLYLDSIF* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01728 446 Coils Coil 91 111 - -
Pte3g01728 446 FunFam WD-40 repeat family protein 227 443 - -
Pte3g01728 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 349 - -
Pte3g01728 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 355 IPR001680 GO:0005515
Pte3g01728 446 SUPERFAMILY WD40 repeat-like 188 426 IPR036322 GO:0005515
Pte3g01728 446 Gene3D - 188 438 IPR015943 GO:0005515
Pte3g01728 446 SMART WD40_4 266 304 IPR001680 GO:0005515
Pte3g01728 446 SMART WD40_4 307 346 IPR001680 GO:0005515
Pte3g01728 446 SMART WD40_4 350 389 IPR001680 GO:0005515
Pte3g01728 446 SMART WD40_4 210 263 IPR001680 GO:0005515
Pte3g01728 446 ProSitePatterns Trp-Asp (WD) repeats signature. 333 347 IPR019775 -
Pte3g01728 446 Pfam WD domain, G-beta repeat 312 346 IPR001680 GO:0005515
Pte3g01728 446 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 31 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01728 Pte-Chr3 16938592 16943221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01728 232 426 Miscellaneous Gene Families AT5G08390 23.618 7.29e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01728 - - tcc:18592188 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01728 3 16938592 16943221 Pte3g01728 3 16938592 16943221 RCT