Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01413 ATGGGAGTACCAGCTTTCTATCGGTGGTTGGCGGAAAAGTACCCATTAATTGTGGTGGATGCAATCGAAGAAGAGCCAGTCGAGATAAATGGAGTCAAGATCCCAATCGATACGAGCAAGAAGAACCCTAATAACATAGAGTATGACAATCTTTACCTCGACATGAATGGGATTATCCATCCTTGCTTTCACCCCGAAGATAGGCCATCTCCAACGACATATGATGAGGTGTTCGAGTGCATGTTCGATTATATCGACAGGCTTTTTTTAATGGTGCGGCCTAGAAAGCTGCTATACATGGCTATTGATGGTGTTGCTCCAAGGGCCAAAATGAATCAGCAGCGGTCTAGACGATTTAGAGCAGCAAAAGATGCAGCAGAAGCGGCTACTGAAGAAGCAAGGTTACGGGAGGAGTTTGAAAGGGAGGGGAGAAAACTACCTCCCAAAGAGGAGTCTCAAGTATGCGATTCCAATGTTATCACACCTGGAACTGAATTCATGGATGTTTTATCAACTGCACTACAATATTACGTTCATCTCAGGCTGAATAATGATCCTGGTTGGCAGAACATTAAGGTTATTCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAACATAAAATCATGTCCTACATTCGTCTACAAAGGAATCTTAAAGGTTATGATCCAAATACAAGACATTGCCTGTATGGTTTGGATGCTGATTTGATCATGTTGGCTTTGGCTACTCATGAGATTCATTTTTCAATTCTTCGTGAGGTTGTGTTCACTCCTGGACAAGACAAATGCTTCCTTTGTGGCCAAATGGGTCATATTGCTGCCAACTGTGAAGGCAAGGCAAAACGGAAGGCTGGCGAATTTGATGAAAAAAGTGGGATTGTTGTGGTTAAAAAGCCTTTCCAGTTCCTCAACATTTGGACTCTTAGAGAGTATTTGGAATATGAGATGAGAATACCGAATTCTCCTTTTGAGATAGATTTTGAACGTATTGTGGATGATTTCATCTTCATATGCTTCTTTGTTGGGAATGATTTCTTACCACACATGCCTACATTGGAGATCCGTGAGGGTGCACTCAATTTACTGATGGCAGTTTACAAAAAGGAATTTAAAGCTATGGGGGGTTATTTAACTGATGCAAGCAAGCCTAATTTAAGTCGGGTGGAGCACTTTATTCAGACTGTTGGATCATATGAAGATAAAATATTCCAGAAAAGAGCTAGATTGCATCAGCGTCAGTCAGAAAGAATAAAGCGTGAAAAGGCACAAGCTCGCAGAGGAGATGATGTAGAGCCTGAAGTTCAACCTGAGTCGTTAGTTGCAGTTTCTCGGTTTCGTGGTTCTCGTCTGGCTACAGGTCCTTCTCCATCTCCATATCAAGGCAGTGGCAAGAGAAGTGTTGACCATCCTGGTAAAGTTGCACGGATGTCTTCTATGTCATCTGTTGGGGCTGCTATTGTTGAAGTTGAGAACAGTATTGAGACAGAAGCCCAAGATAATAAAGATGAGCTGAAGGCAAAGCTTAAAGAGCTAATTCGAGAGAAATCTGATGTATTCAACTCTAAAAATCCTGATGTAGACAAGATTAAATTGGGAGAACCAGGATGGAAAGAGAGGTATTATGAGCAAAAATTTTCCACCGGAACTCCCGAGGAACTTGAAATGATTCGTAAAGATGTTGTATTGAGGTACACCGAAGGCCTTTGTTGGGTTATGCACTACTATTATGAAGGTGTTTGCTCTTGGCAGTGGTTTTATCCTTATCATTATGCTCCCTTTGCCTCGGATCTCAAGGGTCTTGGTGAGATGAAAATAACTTTTAAGCTAGGTTCTCCTTTTAAACCATTCAATCAGCTACTGGGGGTTTTCCCGGCAGCAAGTGCACATGCTCTACCAAAGGAGTACAAGAAGCTGATGACAGATCCAAATTCGCCGATAATTGATTTTTACCCAACTGACTTTGAAGTGGACATGAGTGGTAAACGATATGCTTGGCAGGGTATTGCAAAATTGCCTTTCATTGATGAAACCCGCCTTCTTGCAGAGGTCAAAAAAATTGAACATACATTAACGGATGATGAAGCAAGGCGAAACAGTGTTATGTTTGACGTCCTTTTTGTGAATTCCTGTCATCCGCTCTCTGCATGTATCAGTACTCTAGATAACAAGTGTAAAAATCTGCCAGACAAAGACCGTACTAAAGTTAAGGAAAGAATCAATCCCGGTGAAAGCGGTGGGATGAATGGTTATATATCTCCATGCAGCGGAGAACCTTGCCCACCTATTTTCAGGTCTCCTGTTGCTGGCATGGAGGATATTATGGACAACCAAGTGATATGTGCAATATACAAGCTACCTGATGTACATAAACACATTCCACGACCGCCAGAAGGTGTGAAATATCCCAAGAAGACGGTGGAAATTGGGGATTTGAAACCTGCACCTGTTTTGTGGCACGAGGACACTGGCAGGAGGCCTATAGATGCAAGGGAGAACCCCCCTGGAAGTGTCTCCGGCAAGAATCTAGGGGAGGCTGCACACCGACTGATTGCTAATACCTTGAACTTTAAGGGCGATTCTAATGGCTACAGTAATTTGATGAACGGTCCACCAGAAACTTATGTACCACCTTTGCTTCACCCACCAATAATGTACTCGTATCCTAATCGTGGACACCATCCGGACTATCATGGAATACCTTTAGTCGTTTCACCACCTCAAGTTCAAACTCAAGTTTTACCACCTCAAGTTCAAACTCAAGTTTTATTCCATCCTTCTGTGCGTGGGCCTCGGGGAGTTGGCAATCAACCATATCCCCAACCAATGTATATTTTAGATAATCAGTCGTATCATTATGCAAGCACTGACAATTTCCAGCGTAGGCCTTGCGAAAGAAATAACCAATCAGCTGCTCAGGTTGTAAACCACAACAGGCATGGATTTCAATCTTCAAGGCCAGGATCCATGCAAGGGGCTGGACATATGGCTCGATATCCAGGAGAATATGATAGCCATGCTTACCATGGAGGCTATGGTCACCAGAATTTCCATGCTTCTAGAGATTCTAATTATAACCAGGGTATGCGAAGCTGGAGACCCCATGCCAACCAGGCTGGTCGTGGTAGCCACCAACAATCTGGTAACAGATTTTCTACGCTAGACAAGAGAGCAAACAGAAACTCACAAGCACCTTCAACGCAACAAGGCCATGGTCGCCGATGA 3222 0.432 MGVPAFYRWLAEKYPLIVVDAIEEEPVEINGVKIPIDTSKKNPNNIEYDNLYLDMNGIIHPCFHPEDRPSPTTYDEVFECMFDYIDRLFLMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAAEAATEEARLREEFEREGRKLPPKEESQVCDSNVITPGTEFMDVLSTALQYYVHLRLNNDPGWQNIKVILSDANVPGEGEHKIMSYIRLQRNLKGYDPNTRHCLYGLDADLIMLALATHEIHFSILREVVFTPGQDKCFLCGQMGHIAANCEGKAKRKAGEFDEKSGIVVVKKPFQFLNIWTLREYLEYEMRIPNSPFEIDFERIVDDFIFICFFVGNDFLPHMPTLEIREGALNLLMAVYKKEFKAMGGYLTDASKPNLSRVEHFIQTVGSYEDKIFQKRARLHQRQSERIKREKAQARRGDDVEPEVQPESLVAVSRFRGSRLATGPSPSPYQGSGKRSVDHPGKVARMSSMSSVGAAIVEVENSIETEAQDNKDELKAKLKELIREKSDVFNSKNPDVDKIKLGEPGWKERYYEQKFSTGTPEELEMIRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKGLGEMKITFKLGSPFKPFNQLLGVFPAASAHALPKEYKKLMTDPNSPIIDFYPTDFEVDMSGKRYAWQGIAKLPFIDETRLLAEVKKIEHTLTDDEARRNSVMFDVLFVNSCHPLSACISTLDNKCKNLPDKDRTKVKERINPGESGGMNGYISPCSGEPCPPIFRSPVAGMEDIMDNQVICAIYKLPDVHKHIPRPPEGVKYPKKTVEIGDLKPAPVLWHEDTGRRPIDARENPPGSVSGKNLGEAAHRLIANTLNFKGDSNGYSNLMNGPPETYVPPLLHPPIMYSYPNRGHHPDYHGIPLVVSPPQVQTQVLPPQVQTQVLFHPSVRGPRGVGNQPYPQPMYILDNQSYHYASTDNFQRRPCERNNQSAAQVVNHNRHGFQSSRPGSMQGAGHMARYPGEYDSHAYHGGYGHQNFHASRDSNYNQGMRSWRPHANQAGRGSHQQSGNRFSTLDKRANRNSQAPSTQQGHGRR* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01413 1073 Gene3D - 603 700 - -
Pte3g01413 1073 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Pte3g01413 1073 MobiDBLite consensus disorder prediction 446 469 - -
Pte3g01413 1073 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Pte3g01413 1073 MobiDBLite consensus disorder prediction 1013 1073 - -
Pte3g01413 1073 MobiDBLite consensus disorder prediction 1016 1073 - -
Pte3g01413 1073 MobiDBLite consensus disorder prediction 413 433 - -
Pte3g01413 1073 Coils Coil 494 521 - -
Pte3g01413 1073 Pfam Xrn1 helical domain 325 810 IPR041412 -
Pte3g01413 1073 CDD PIN_XRN1-2-like 51 312 - -
Pte3g01413 1073 FunFam 5'-3' exoribonuclease 600 700 - -
Pte3g01413 1073 PIRSF Exonuclease_Xrn2 1 896 IPR017151 GO:0004534|GO:0005634|GO:0006139
Pte3g01413 1073 PIRSF Exonuclease_Xrn2 908 1073 IPR017151 GO:0004534|GO:0005634|GO:0006139
Pte3g01413 1073 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Pte3g01413 1073 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Pte3g01413 1073 FunFam 5'-3' exoribonuclease 149 372 - -
Pte3g01413 1073 Gene3D - 144 378 - -
Pte3g01413 1073 Gene3D - 1 143 - -
Pte3g01413 1073 PANTHER 5'->3' EXORIBONUCLEASE 1 1043 IPR027073 -
Pte3g01413 1073 FunFam 5'-3' exoribonuclease 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01413 Pte-Chr3 12367923 12377872 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01413 K12619 - qsa:O6P43_016259 1553.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01413 3 12367923 12377872 Pte3g01413 3 12367923 12377872 RCT