Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte3g01404 | ATGTCTGAAGTTGAATCGGAGAGTAACGCTGAACCGCAAGTGGAGGAGGCGGAGGAGGTAACGGGTGGGGAGCTCTTGTTTTGCGGTGGCACTTTTTGGGATATCGTTGGTCGACGCAAAGGCTCCACGGACGGTAACTTGGTCGCTCCCACTCGGCTTCGCCCTCTAATTGGTGTTGATATTAGATTCGTTGCCTCTGGGTGCTCATCATGTCATTGCGTTGCTTTGGATGTGGGAGGCCGTTGCTATTCATGGGGGCGCAACGAGAAAGGGCAATTGGGTCATGGAGACACTATCCAACGGGATAGGCCGACTGTTGTTTCGGGACTTTCCCAGTACAAAGTAGTCAAAGCAGGAGCAGGCCGGAGTCATTCAGTTGTTGCTTCTGAGGATGGGCAATCCTTCTCCTTTGGCTGGAATAAGCATGGACAGCTTGGTTCGGGTTCCGTAAAAAATGCAATTGAAGCATCTCCAGTACGCTGTCTGGTATCTGGTGTCAAACATACTACTTGCGGGGCTGACTTCACAGTGTGGTTAACTTCTACTGAAGGAGCTTCTATACTGACTGCAGGCCTTCCACAGTATGGACAGCTTGGTCATGGAACCAATAATGAGTACAATTCAAAAGACAGCTCCGTGAGGCTAGTATATGAACCCCAACCACACCCAAGGGCTATTGTGACTCTCTCTAGTGTGACAATCATCAAAGCTGCTTGCGGAACAAACCACACAGTTGCTGTCGATTCTGATGGATTTGTGTACACGTGGGGCTTTGGTGGTTATGGAAGGCTTGGACATAGAGAACAGAAAGATGAGTGGGCCCCTCGCCGTGTTGAAGCTTTTCAGAATAGGAATGTCTTGCCTTCTGATGCAGTCATTTCAGCTGGGTCGGTAAATTCAGCATGTACTGCAGGTGGAGGGCAGTTGTATATGTGGGGCAAAGTAAAGATCAGTGGTGATGACTGGATGTATCCAAAACCTCTCCTGGATCTCAGTGGGTGGAATATACGATGCATGGATTCTGGCAATATGCACTACTTTGTTGGTGCAGATTCTTCCTGCATCAGCTGGGGCAATGCTCAGTATGGAGAGCTGGGATACGGTCCTAATGGTCAGAAGTCTTCTGCAGTACCCAAGAAGGTGGATGTTCTTGATGGCATGGACGTTATCAGTGTTGCTTGTGGCATGGGCCACTCTATGGTTGTCGTTGATAGAAAAGATGTAGCTGGCCGTCTTGAACTGCTGAATGTATACGATGGGAAAGCTTCTGATCAAGCAATAGAACCAGACAGCAACAATGCAGTTGGCAATCCAACATCAAAAAAGGGTACCATCCCTGTAAATTCCAAGAGGAAGAAGTCAAAACATTCATCCGAGTCAGAAGACGAAGAGGATGTTGATCAAGAAAGTGATGGAAGTGAGGAAGAGGCAAAAGATAAAAAGCCACATGCTAGGAAAGCATCTGGGGTTGGTCGAGGCAACGCTTCTAAAAGTTCAGCTAGTGTAGGAAAAGGCACTGGGAGAGGGAGGTGCCCTCCTTCGGCTGGTGAGAGGTCAAAATCTTCTCAACGGAAAACAGGCAAGGGAAGACCACGAAAATGA | 1602 | 0.4844 | MSEVESESNAEPQVEEAEEVTGGELLFCGGTFWDIVGRRKGSTDGNLVAPTRLRPLIGVDIRFVASGCSSCHCVALDVGGRCYSWGRNEKGQLGHGDTIQRDRPTVVSGLSQYKVVKAGAGRSHSVVASEDGQSFSFGWNKHGQLGSGSVKNAIEASPVRCLVSGVKHTTCGADFTVWLTSTEGASILTAGLPQYGQLGHGTNNEYNSKDSSVRLVYEPQPHPRAIVTLSSVTIIKAACGTNHTVAVDSDGFVYTWGFGGYGRLGHREQKDEWAPRRVEAFQNRNVLPSDAVISAGSVNSACTAGGGQLYMWGKVKISGDDWMYPKPLLDLSGWNIRCMDSGNMHYFVGADSSCISWGNAQYGELGYGPNGQKSSAVPKKVDVLDGMDVISVACGMGHSMVVVDRKDVAGRLELLNVYDGKASDQAIEPDSNNAVGNPTSKKGTIPVNSKRKKSKHSSESEDEEDVDQESDGSEEEAKDKKPHARKASGVGRGNASKSSASVGKGTGRGRCPPSAGERSKSSQRKTGKGRPRK* | 534 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte3g01404 | 533 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 237 | 247 | IPR000408 | - | |
| Pte3g01404 | 533 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 80 | 131 | IPR000408 | - | |
| Pte3g01404 | 533 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 352 | 405 | IPR000408 | - | |
| Pte3g01404 | 533 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 356 | 402 | IPR000408 | - | |
| Pte3g01404 | 533 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 80 | 127 | IPR000408 | - | |
| Pte3g01404 | 533 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 250 | 288 | IPR000408 | - | |
| Pte3g01404 | 533 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 188 | 247 | IPR000408 | - | |
| Pte3g01404 | 533 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 131 | 177 | IPR000408 | - | |
| Pte3g01404 | 533 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 132 | 182 | IPR000408 | - | |
| Pte3g01404 | 533 | SUPERFAMILY | RCC1/BLIP-II | 21 | 405 | IPR009091 | - | |
| Pte3g01404 | 533 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 392 | 402 | IPR000408 | - | |
| Pte3g01404 | 533 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 251 | 306 | IPR000408 | - | |
| Pte3g01404 | 533 | Gene3D | - | 6 | 217 | IPR009091 | - | |
| Pte3g01404 | 533 | Gene3D | - | 218 | 414 | IPR009091 | - | |
| Pte3g01404 | 533 | MobiDBLite | consensus disorder prediction | 424 | 533 | - | - | |
| Pte3g01404 | 533 | PRINTS | Chromosome condensation regulator RCC1 signature | 134 | 150 | IPR000408 | - | |
| Pte3g01404 | 533 | PRINTS | Chromosome condensation regulator RCC1 signature | 81 | 97 | IPR000408 | - | |
| Pte3g01404 | 533 | PRINTS | Chromosome condensation regulator RCC1 signature | 237 | 253 | IPR000408 | - | |
| Pte3g01404 | 533 | PRINTS | Chromosome condensation regulator RCC1 signature | 115 | 128 | IPR000408 | - | |
| Pte3g01404 | 533 | PRINTS | Chromosome condensation regulator RCC1 signature | 253 | 267 | IPR000408 | - | |
| Pte3g01404 | 533 | MobiDBLite | consensus disorder prediction | 426 | 445 | - | - | |
| Pte3g01404 | 533 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 185 | 250 | IPR000408 | - | |
| Pte3g01404 | 533 | PANTHER | PROTEIN RCC2 | 10 | 511 | IPR028641 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte3g01404 | Pte-Chr3 | 12263140 | 12268801 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte3g01404 | - | - | qsa:O6P43_016245 | 787.334 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pte3g01404 | 3 | 12263140 | 12268801 | Pte3g01404 | 3 | 12263140 | 12268801 | RCT |