Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01400 ATGAGCACAAGACCTCCACCTGATCCCGTGGCAGTCCTTCGAGGCCATCGAGCTTCTGTCACAGACATCTGCTTTCATACTTCTAGACCCATTTTGTTTTCTGGTTCAGCTGATGGTGAATTGAGAATATGGGATACAATTCAGCATCGCACTTTATCATCTGCACGAGTCCATAGTGCTGCGTATGGGGTTATTGCCGTTGCCTGCAGTGAAATAATTGGAACCAACAAAGTTGTTAGCCAGAGTAGGGAGGGGACTGTGAAACTCTGGGACATTGAAGACAATGGTCTGTCCAGGACTCCATGTCTTACAATTAACACAAGTTCTTTCCACTTTTGCAAGCTATCCCTCCTGAAGAAGCCTTTTACTTCTTTGGGGAATGAACATGAAACTTTTGATGCAGATCCGGTGGCTCAAACTGAACTAGAGTATCAAGATTACACGCATGGACAAGGCTCAAAGTATATGGCCATATCTGGCGAGCAGGCTAAGGAGGTTAAGACTAGATCACTTTTTGTACTAATACTTCAATTTGTCTGTTTCTTCAATATGTATGAGTCCTTGTGGCACCAACTTTGTGTTTCATATTTCTCATCGTGTGATCGATCAAAGGTTGAGATCTGGGATCTAAATTCTGCGGAACGGTCTGCACGGCTGCTGCAGAGCAAAGCTGGAATGTGTATGGCGTTGCAGTTATTTGCACCATCTCAGTCGCAAGGATTTTTGCATATCTTGGCTGGATACGAGGATGGTTCCATGCTGTGGTGGGATGTTAGGAATCCAAGTTCTCCACTGACTTCTGTAAAATTCCATTCAGAGCCAGTTTTAAGCATATGCATGGATGAGGTTTGCAGTGGCGGTCTCACTGGAGCTGCAGATGATAAGATCATAATTTATTCTTTGGATCATTCGAAGGGCACTTGTGTGGTAAAGAGAGATATCGCTTTGGAAAGACCTGGAATAGCAGGCACCTCCATAAGACCAGATGGTAAAATCGCTGCCACTGCTGGTTGGGACCACAGAATAAGGATATATAATTATCGGAAAGGCAATGCATTGGCGATATTGAAATATCATCATGCCACGTGTAATGCTGTCACCTATTCACGTGATAATAAGCTAATGGCTTCTTCATCAGAAGATACAACAGTGGCATTATGGGAACTGTACCCTCCACAAAGCTAA 1185 0.4388 MSTRPPPDPVAVLRGHRASVTDICFHTSRPILFSGSADGELRIWDTIQHRTLSSARVHSAAYGVIAVACSEIIGTNKVVSQSREGTVKLWDIEDNGLSRTPCLTINTSSFHFCKLSLLKKPFTSLGNEHETFDADPVAQTELEYQDYTHGQGSKYMAISGEQAKEVKTRSLFVLILQFVCFFNMYESLWHQLCVSYFSSCDRSKVEIWDLNSAERSARLLQSKAGMCMALQLFAPSQSQGFLHILAGYEDGSMLWWDVRNPSSPLTSVKFHSEPVLSICMDEVCSGGLTGAADDKIIIYSLDHSKGTCVVKRDIALERPGIAGTSIRPDGKIAATAGWDHRIRIYNYRKGNALAILKYHHATCNAVTYSRDNKLMASSSEDTTVALWELYPPQS* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01400 394 ProSitePatterns Trp-Asp (WD) repeats signature. 375 389 IPR019775 -
Pte3g01400 394 Gene3D - 190 393 IPR015943 GO:0005515
Pte3g01400 394 Gene3D - 3 156 IPR015943 GO:0005515
Pte3g01400 394 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Pte3g01400 394 Pfam WD domain, G-beta repeat 353 387 IPR001680 GO:0005515
Pte3g01400 394 Pfam WD domain, G-beta repeat 315 346 IPR001680 GO:0005515
Pte3g01400 394 PANTHER TRANSDUCIN BETA-LIKE 3 5 389 - -
Pte3g01400 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 394 IPR001680 GO:0005515
Pte3g01400 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Pte3g01400 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 394 - -
Pte3g01400 394 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Pte3g01400 394 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Pte3g01400 394 PRINTS G protein beta WD-40 repeat signature 375 389 IPR020472 -
Pte3g01400 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Pte3g01400 394 SUPERFAMILY WD40 repeat-like 5 388 IPR036322 GO:0005515
Pte3g01400 394 SMART WD40_4 307 346 IPR001680 GO:0005515
Pte3g01400 394 SMART WD40_4 48 91 IPR001680 GO:0005515
Pte3g01400 394 SMART WD40_4 261 300 IPR001680 GO:0005515
Pte3g01400 394 SMART WD40_4 6 45 IPR001680 GO:0005515
Pte3g01400 394 SMART WD40_4 349 388 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01400 244 389 Miscellaneous Gene Families AT5G08390 27.027 1.31e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01400 K24770 - qsa:O6P43_018649 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01400 3 12215117 12224946 Pte3g01400 3 12215117 12224946 RCT