Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01339 ATGAGGGACGACAGAGTGTTTGCTGAATCCGACAGCATGTCACTCCCGAAATATGATACCATGTTGTATTCTGATCCAAACCTTGGTTACACCTGCAATTCCAACGATGATGATTTCCCCATGCGACACAGCAGTGCCTCTCTTGTTGCTCCTGGGCATTCTGAACTAAGTCGTGTGAGCGGCGAGGGTTCTCCCATGACCATGTCCCCCTGGAACCAGACAGCTTTTGTCTCCAAATCGCCGTTGTCTCGACAAGAGGACAGCCTGCCCCGGAATTGTCTAGTAGGCTCGATTGTTCGTGAGGAAGGACATATTTATTCATTGGCTGCATCGTGTGATCTATTGTACACAGGATCAGACAGCAAAAACATCCGTGTGTGGAAGAATCTGAAGGAGTTTTCCGGCTTCAAATCAAACAGTGGCTTAGTCAAAGCCATCATCGTCTCCCGTGGGAGAATTTTTACTGGACACCAGGACGGCAAAATCCGTGTTTGGAAGCTCTCTCCTAAAAACCCTAACGTTCACAAGCGTGCAGGTACCTTGCCCACTTTGAAAGACATTTTCAAGAGCTCTCTCAAACCCAGCAATTACGTCGAAGTCAGACGCCGTCGTTCAGCTCTCCGTATTAAACACTCCGATGCAGTTTCCTGTTTGAGCTTGACGCATGACGGCGTGTATTTGTATTCAGCTTCCTGGGATAGGACCATGAAGGTGTGGAGGCTCTCCGATTCCAAGTGTGTGGAATCACTCAGCGCCCATGAAGATGCCATCAACGCCGTCGTTTGCGGTCTTGATGCACTGGTGTATACGGGATCCGCAGATGGCACCGTTAAGGTGTGGCAGAGAGAGCAAACTGGGAAAGGGACAAAGCACACTGCTGTGAAGACTCTCTTGCAGCAAGAATGTGCTGTTACCGCTTTGACATTGAACACCACCGGTTCGGTTTTCTACTCTGCATCGTCTGATGGGTTGGTAAACTTCTGGGAACGTGAGAAGCAGTTCAGTCACGGTGGAGTCCTGAGGGGCCACAAACTTGCGGTACTTTGCCTGGCTGCCGCAGGAAATGAGTTGGTGTTGAGTGGGTCTGCCGATAAGACGATCTGCATGTGGAGGAGGGACGGCATGATCCACAATTGCCTGTCAGTTTTGACGGGTCATAATGGGCCTGTGAAATGTTTAGCCGTGGAGGTTGAGAAGGAGGAATCATTGTCAAGAAAAGATCAGAGGTGGATCGTGTACAGTGGAAGCCTTGACAAGTCGGTGAAGGTGTGGAGCGTGTCGGCCATGGCGGCGGATACGGGCAACATGATGTCAAAGACGCCTCAGACGGTTTCGGATACGGACTCTTCAGCTTCTGATGGAAGAGTATCCTCTGCGTCAGGGAGCACTGCCAGGCAAAACAGAAGGTACTGA 1413 0.5053 MRDDRVFAESDSMSLPKYDTMLYSDPNLGYTCNSNDDDFPMRHSSASLVAPGHSELSRVSGEGSPMTMSPWNQTAFVSKSPLSRQEDSLPRNCLVGSIVREEGHIYSLAASCDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIVSRGRIFTGHQDGKIRVWKLSPKNPNVHKRAGTLPTLKDIFKSSLKPSNYVEVRRRRSALRIKHSDAVSCLSLTHDGVYLYSASWDRTMKVWRLSDSKCVESLSAHEDAINAVVCGLDALVYTGSADGTVKVWQREQTGKGTKHTAVKTLLQQECAVTALTLNTTGSVFYSASSDGLVNFWEREKQFSHGGVLRGHKLAVLCLAAAGNELVLSGSADKTICMWRRDGMIHNCLSVLTGHNGPVKCLAVEVEKEESLSRKDQRWIVYSGSLDKSVKVWSVSAMAADTGNMMSKTPQTVSDTDSSASDGRVSSASGSTARQNRRY* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01339 470 Gene3D - 88 199 IPR015943 GO:0005515
Pte3g01339 470 SMART WD40_4 129 166 IPR001680 GO:0005515
Pte3g01339 470 SMART WD40_4 290 329 IPR001680 GO:0005515
Pte3g01339 470 SMART WD40_4 243 281 IPR001680 GO:0005515
Pte3g01339 470 SMART WD40_4 91 128 IPR001680 GO:0005515
Pte3g01339 470 SMART WD40_4 376 425 IPR001680 GO:0005515
Pte3g01339 470 SMART WD40_4 333 371 IPR001680 GO:0005515
Pte3g01339 470 SMART WD40_4 202 240 IPR001680 GO:0005515
Pte3g01339 470 SUPERFAMILY WD40 repeat-like 102 427 IPR036322 GO:0005515
Pte3g01339 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 329 IPR001680 GO:0005515
Pte3g01339 470 Gene3D - 200 333 IPR015943 GO:0005515
Pte3g01339 470 CDD WD40 102 425 - -
Pte3g01339 470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 281 - -
Pte3g01339 470 Pfam Nucleoporin Nup120/160 100 329 - -
Pte3g01339 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 249 IPR001680 GO:0005515
Pte3g01339 470 Gene3D - 335 469 IPR015943 GO:0005515
Pte3g01339 470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 245 - -
Pte3g01339 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 281 IPR001680 GO:0005515
Pte3g01339 470 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 48 429 IPR045182 -
Pte3g01339 470 MobiDBLite consensus disorder prediction 435 470 - -
Pte3g01339 470 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Pte3g01339 470 PRINTS G protein beta WD-40 repeat signature 227 241 IPR020472 -
Pte3g01339 470 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Pte3g01339 470 Pfam WD domain, G-beta repeat 378 425 IPR001680 GO:0005515
Pte3g01339 470 Pfam WD domain, G-beta repeat 338 370 IPR001680 GO:0005515
Pte3g01339 470 FunFam BnaA09g28200D protein 198 285 - -
Pte3g01339 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 370 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01339 Pte-Chr3 11529498 11531853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01339 209 429 Miscellaneous Gene Families AT5G08390 24.889 3.88e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01339 - - qsa:O6P43_018865 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01339 3 11529498 11531853 Pte3g01339 3 11529498 11531853 RCT