Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01300 ATGGGCCAGTTCGCTTCCACGGCGACGATCAGCTTAAGCCGTCGAGATTGCAATCGTAGCCATCGATTCAAGTTCAAGCAAACGGATCTAGTTTCTCCTATGCTTTCTGATGTTTCCAGCGAGTATCTTCATACTGTAAATCACGAGCTTCATGACTATACCTCCGATCTTCCAGACGAGTGCTTGGCAAGCATTTTTCAGTCACTTAGCCCTGGCGACCGAAAAATATGTTCTCTCGTCTGCCGCCGATGGCTTCAAGTCGAAGGACAGAGTCGTCAACGGCTATTTCTCAAAGCTGAATCCGATCTCTTCCCAGAGATCCCCTCTATCTTCTCACGATTCGATGCCGTCACGAAGCTCGCTCTTAAATGTGACCGCAGAGCAGTCAGCATCGGCGATGACGGGCTCATCCTCCTTTCTCTGCACTGCCGTAACCTCACGCGCCTCAAACTCCGTGCCTGCAAGGAGCTTACTGATGCTGGCATGGAGGCCTTCGCTAAGAATTGCAAGAGTTTGAAAAAACTCTCATGTGGATCGTGCACCTTCGGAGCAAGAGGTATGAACGCCGTACTCGATAACTGCTCCCAACTCGAAGAATTGTCTGTGAAGCGCCTCAGAGGGTTCACAGATGGACCTTCGGCGGAGCCCATCAGGCCTGGAGTTGCAGCGTCGTCTCTCAAAACGATTTGCATGAAGGATCTGTATAATGGGCAGTGTTTCGGGCCTCTTATAATGGGGTCGAAGAATCTGAGGACTTTGAAGCTTTTTAGGTGCTCTGGTGATTGGGATAAGATTCTTCAAGTTGTCGCTGATATAATTTTGAGTGTAATCGAATTACATCTTGAGAGGATACAAATCAGTGACGCTGGTCTCCTCGCTATATCCAATTTTTCAAATCTAGAAATTTTGCATCTTGTCAAGACCCCAGAGTGTACAAATTGGGGGATAGTTTCTGTTGCAGAAAAGTGTAAGCTTTTAAGGAAGCTTCATATCGATGGGTGGAAAGCCAATCGAATAGGCGATGACGGTTTGATAGCTCTTGCAAAATATTGCCCAAATCTGCAGGAATTGGTATTGATCGGTGTCAACCCTACAAAGACGAGCTTGGAAGTGTTGGCATCCGGTTGTCTGAATTTAGAAAGGCTAGCTCTCTGTGGAAGTGATACAGTTGGAGATGCCGAGATATCGTGTATTGCAGCAAAATGTTTGGCGCTGAAGAAGCTTTGTATTAAGAGTTGCCCTGTGTCTGATCACTGTATGGAAGCACTCGCAGGTGGATGTCCTAATTTGGTCAAAGTAAAGGTGAAAAAGTGTAAACATGTAACGCCTGAGGGTGCAGCTTGGTTGAGGTTAATTAGAGCTTCGCTCTCCGTTAATTTGGATACTGGTGAAACGGAGCAACAGGATGCAAGTACTAGTGACGGTGGACCTCAAGACAATGGTGTGGAAGTTCCTCCATTGCCCACTGGCCACATGGGAGGTCCAAATATTGCATCAAGCAGTACTGGTCGATCAACTTCCTTTAAATCGAGATTAGGCCTTTTTGGTGGGAGGAGTCTTATGGCATGCACCATGAGAAGGTGGTCCAATGGTAATGTCAGTTCGAGGAATAGTTAG 1617 0.4694 MGQFASTATISLSRRDCNRSHRFKFKQTDLVSPMLSDVSSEYLHTVNHELHDYTSDLPDECLASIFQSLSPGDRKICSLVCRRWLQVEGQSRQRLFLKAESDLFPEIPSIFSRFDAVTKLALKCDRRAVSIGDDGLILLSLHCRNLTRLKLRACKELTDAGMEAFAKNCKSLKKLSCGSCTFGARGMNAVLDNCSQLEELSVKRLRGFTDGPSAEPIRPGVAASSLKTICMKDLYNGQCFGPLIMGSKNLRTLKLFRCSGDWDKILQVVADIILSVIELHLERIQISDAGLLAISNFSNLEILHLVKTPECTNWGIVSVAEKCKLLRKLHIDGWKANRIGDDGLIALAKYCPNLQELVLIGVNPTKTSLEVLASGCLNLERLALCGSDTVGDAEISCIAAKCLALKKLCIKSCPVSDHCMEALAGGCPNLVKVKVKKCKHVTPEGAAWLRLIRASLSVNLDTGETEQQDASTSDGGPQDNGVEVPPLPTGHMGGPNIASSSTGRSTSFKSRLGLFGGRSLMACTMRRWSNGNVSSRNS* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01300 538 FunFam F-box/LRR-repeat protein 3 isoform X1 53 92 - -
Pte3g01300 538 Pfam F-box domain 55 86 IPR001810 GO:0005515
Pte3g01300 538 FunFam F-box protein SKIP2 89 470 - -
Pte3g01300 538 CDD F-box_AtTIR1-like 55 92 - -
Pte3g01300 538 SUPERFAMILY F-box domain 52 87 IPR036047 GO:0005515
Pte3g01300 538 ProSiteProfiles F-box domain profile. 51 99 IPR001810 GO:0005515
Pte3g01300 538 SMART LRR_CC_2 351 375 IPR006553 -
Pte3g01300 538 SMART LRR_CC_2 143 168 IPR006553 -
Pte3g01300 538 SMART LRR_CC_2 376 401 IPR006553 -
Pte3g01300 538 SMART LRR_CC_2 323 350 IPR006553 -
Pte3g01300 538 SMART LRR_CC_2 297 322 IPR006553 -
Pte3g01300 538 SMART LRR_CC_2 169 193 IPR006553 -
Pte3g01300 538 SMART LRR_CC_2 402 426 IPR006553 -
Pte3g01300 538 SMART LRR_CC_2 427 458 IPR006553 -
Pte3g01300 538 SMART LRR_CC_2 194 232 IPR006553 -
Pte3g01300 538 SUPERFAMILY RNI-like 106 462 - -
Pte3g01300 538 MobiDBLite consensus disorder prediction 462 506 - -
Pte3g01300 538 MobiDBLite consensus disorder prediction 462 478 - -
Pte3g01300 538 Gene3D - 53 87 - -
Pte3g01300 538 Gene3D Ribonuclease Inhibitor 88 475 IPR032675 -
Pte3g01300 538 PANTHER UNCHARACTERIZED 55 465 - -
Pte3g01300 538 Pfam Leucine Rich repeat 142 166 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01300 Pte-Chr3 11150339 11152695 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01300 - - cit:102622449 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01300 3 11150339 11152695 Pte3g01300 3 11150339 11152695 RCT