Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01283 ATGTGGAAGGAGATCAGAGACAGAGAAGTGGGTAAAGTCCTCCCAAATCCCTTCGTTAATCGTGTTAAGTCCAATCGTATTGCTCAGCTTCAGCTTTCCAACCACAAGGATATTGTCTCCACTCACAAAGGAGCTGTTAATTCGCTTCAGGTTGATTTGACAGAAGGAAGATATTTGTTATCTGGTGCATCAGATGCTTCAGCTGCTGTGTATGACATTCAGCGTGCCACAGATTTTGAAGCAGATGGTCTAATAGCAAAACACAAGTGCCTATTTACCGTTGACAAGCAGCATGAGCAGGGGCATAAATACGCTATTTCCTCAGCTACTTGGTATCCAATTGACACAGGACTCTTCATTACGGGCTCATATGATCACCATATAAATGTGTGGGATACAAATACCACTCGGGTGGTAGTCAATTTTAAAATGCCCGGAAAGGTCTATAAGACTGCCATGTCCACATTGGCAACTTCACATATGTTGATTGCTGCTGGAACAGAGGATGTTCAAGTTCGTCTTTGTGATATTGCTTCAGGGGCATTCGCTCATACTCTCTCTGGTCACCGTGATGGTGTAGTGGCAGTGGAATGGTCTAGCTCAAGTGAATGGGTTTTGGTAACTGGTGGATGTGATGGTGCAGTGCGCTTTTGGGACATCCGACGTGCTGGCTGTTTTCTTGTATTGGATCAATCTCGGTCTCAGCTGGGAAGACGGCCACCTCTTCTTAAACGATCAATGATAATGAAGGATTCAACATCTAAGACTCCCTTGGGAGGTCAAAACCTAGTTGCAAAATCTCGGGTGGCACATAAGAAACTTGCTAACGGAAATAGTATGAAGCAGTCATCAACTGGTAGATTGGCAACCAAAGGATCCATGAAACAAAGATTACATCCAGGAATGCTCTCGATTCACAATCATGCAACTGCTCATTATGGTACTGTGACGGGGTTGAAAGCAACTGAAGATGGCATGTATCTTCTTACTGCAGGCTCTGATTCAAGATTAAGACTATGGGATATCGAATCTGGCTGCGATACACTTGTAAACTTTGAAACTGTTCGGCTGCAAACAAGCAAGCCTATTCAGATGGCCACTACGCAAGATTCATCCCTTGTTTTTGTTCCATGCATGAGATCTGTGAAGGGTTTTGATTTGTGGTCAGGCCAGACATCCACATCACTTCATGGGCACTATGAGTGTGTAAACTGTTGTTGGTTCAGTTTCCAGGATCAGGAATTGTACACTGGTGGAAATGATCGGCAAATTCTTGTCTGGTCGCCGTCTTCAAATCTTGCTGGCGATACGGATGAGGAACCCATTGAAGATCGCGACAACTGGAGTGATTAA 1353 0.4435 MWKEIRDREVGKVLPNPFVNRVKSNRIAQLQLSNHKDIVSTHKGAVNSLQVDLTEGRYLLSGASDASAAVYDIQRATDFEADGLIAKHKCLFTVDKQHEQGHKYAISSATWYPIDTGLFITGSYDHHINVWDTNTTRVVVNFKMPGKVYKTAMSTLATSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVVAVEWSSSSEWVLVTGGCDGAVRFWDIRRAGCFLVLDQSRSQLGRRPPLLKRSMIMKDSTSKTPLGGQNLVAKSRVAHKKLANGNSMKQSSTGRLATKGSMKQRLHPGMLSIHNHATAHYGTVTGLKATEDGMYLLTAGSDSRLRLWDIESGCDTLVNFETVRLQTSKPIQMATTQDSSLVFVPCMRSVKGFDLWSGQTSTSLHGHYECVNCCWFSFQDQELYTGGNDRQILVWSPSSNLAGDTDEEPIEDRDNWSD* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01283 450 SUPERFAMILY WD40 repeat-like 39 431 IPR036322 GO:0005515
Pte3g01283 450 SMART WD40_4 389 428 IPR001680 GO:0005515
Pte3g01283 450 SMART WD40_4 32 72 IPR001680 GO:0005515
Pte3g01283 450 SMART WD40_4 302 341 IPR001680 GO:0005515
Pte3g01283 450 SMART WD40_4 179 219 IPR001680 GO:0005515
Pte3g01283 450 SMART WD40_4 87 132 IPR001680 GO:0005515
Pte3g01283 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 39 81 IPR001680 GO:0005515
Pte3g01283 450 ProSitePatterns Trp-Asp (WD) repeats signature. 328 342 IPR019775 -
Pte3g01283 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 141 IPR001680 GO:0005515
Pte3g01283 450 MobiDBLite consensus disorder prediction 430 450 - -
Pte3g01283 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 221 - -
Pte3g01283 450 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Pte3g01283 450 PRINTS G protein beta WD-40 repeat signature 119 133 IPR020472 -
Pte3g01283 450 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Pte3g01283 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 350 IPR001680 GO:0005515
Pte3g01283 450 FunFam Transducin/WD40 repeat-like superfamily protein 2 267 - -
Pte3g01283 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 221 IPR001680 GO:0005515
Pte3g01283 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 396 428 IPR001680 GO:0005515
Pte3g01283 450 Gene3D - 1 293 IPR015943 GO:0005515
Pte3g01283 450 ProSitePatterns Trp-Asp (WD) repeats signature. 206 220 IPR019775 -
Pte3g01283 450 Pfam WD domain, G-beta repeat 310 341 IPR001680 GO:0005515
Pte3g01283 450 Pfam WD domain, G-beta repeat 390 428 IPR001680 GO:0005515
Pte3g01283 450 Pfam WD domain, G-beta repeat 100 132 IPR001680 GO:0005515
Pte3g01283 450 Pfam WD domain, G-beta repeat 184 219 IPR001680 GO:0005515
Pte3g01283 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 345 - -
Pte3g01283 450 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 450 IPR042238 GO:0006283
Pte3g01283 450 Gene3D - 301 442 IPR015943 GO:0005515
Pte3g01283 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 99 135 - -
Pte3g01283 450 FunFam Excision repair cross-complementation group 8 289 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01283 Pte-Chr3 10977448 10980817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01283 118 226 Miscellaneous Gene Families AT5G08390 28.440 5.87e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01283 K10570 - qsa:O6P43_019014 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01283 3 10977448 10980817 Pte3g01283 3 10977448 10980817 RCT