Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01240 ATGGTACGTCTGCGTCATGTGAATAAGAAGACGTCGCGACCATCGTCTAATGTAGCAGCGGCGGCTACCGTCTCCTCCGGCAAGAAAAAAGAACGGGAGCCGAGGTTGAATGGCGCGGAGAGGTCGGCGTACTTCGCGAGAAGAGAGGCGGCAAAGGTGTTGAGACAAGTTCTTCAAGGCGATGCTAGACGCAGAGCGGTTGCCTCTATCAAATCTCTCATCTACAAACCTTCTGTTAGAAACAAGAAGGGCACATTTGCTCTTGTTTGCCAAACACTCAAATATCTTTCTGTTATAAAGGATGTCTTGGAAGGTGCTTCTATATGGAACAGCCGATGGAAGAGACAAGAAGAATTGATATACATAGTTGCATACGACATACTTTTTGGCGAGGCAGTTTCACTTGTTGGTGATGCAGAGAAGTTGCTTGTACGCCGTAAGGATAACCTACAGATAGCTCTTGAACGAACTATGAAAAGGAAAAAAGTAAAGACGATCGATGAATTGGTTGGTTCATATAAGATATCTGACGTACCTCGCTATGTTCGTGTCAACACGCTAAAGCTGGATGTTGATTCTGCCATACTTGCCTTGAAGAAAAGGTACAAGGTTCAAAAGGATGACTTGCTGCCTGATTTGTTGATTCTCCCACCAGGTACAGATTTACATGATCATCCACTGATCAAGAATGGAAGTATCTTCATGCAAGGTAAAGCAAGTTCCATGGTTGCGGCAGCTCTTAATCCCCAGCCAGGATGGGAGGTTCTTGATGCGTGTGCTGCCCCTGGAAACAAAACCGTCCACCTTGCTGCTCTAATGAGGAAAAAGGGTAGAGTTATAGCATGTGAGCTGAAAAAAGAAAGAATTAAACGCCTAAATGAAACCATTGAGCTCTCTGGTTCTTCCAATATAAAGGTTATTCAAGGGGATTTCTTGGAATTAAAGCCAAAGGATCCATCATTCTCCAAGGTCCGGGCTATTCTCCTGGATCCTTCATGCTCCGGGTCTGGTACTGCGTCTTCAAGACTGGATCATTTACTCCCTTCACACAATGCAGATCAAGATACTGATACTGAGAGATTGAACAAACTGGCTGCCTTTCAGAGGAAGGCTCTTACACATGCTTTGTGTTTTCCGGCAGTTGAGAGAGTAGTTTATAGCACATGTTCCACACACCAAATTGAAAACGAAGATGTCATCCAGTCTGTTCTACCTGTTGCCACATCGCACGGGTTTCAACTGGCCACCCCTTTCCCCCAGTGGCCACGACGTGGTCTTCCCGTATTTGAAGGCTCCGAACACCTGCTTCGAACGGATCCGAAAGTAGATGGTGAGGGTTTTTTCATAGCTCTATTTGTCAGGAAAGGTACTTCAGATATTTCAGAACAGCCAAATAGAGCCGAAGTTGCGCAATGTGGGGCTCAGGTTCCCATGAAGATAATTAGGGATAGGAGAAGGACGAGAGTTGTGCCATACACCCCTGTCAAAATGTATAAAATGTGGTCGCTATTGATGTGGGGAAACTGCGGCAATAGGAAAACGATCCGAGGCTAA 1554 0.4556 MVRLRHVNKKTSRPSSNVAAAATVSSGKKKEREPRLNGAERSAYFARREAAKVLRQVLQGDARRRAVASIKSLIYKPSVRNKKGTFALVCQTLKYLSVIKDVLEGASIWNSRWKRQEELIYIVAYDILFGEAVSLVGDAEKLLVRRKDNLQIALERTMKRKKVKTIDELVGSYKISDVPRYVRVNTLKLDVDSAILALKKRYKVQKDDLLPDLLILPPGTDLHDHPLIKNGSIFMQGKASSMVAAALNPQPGWEVLDACAAPGNKTVHLAALMRKKGRVIACELKKERIKRLNETIELSGSSNIKVIQGDFLELKPKDPSFSKVRAILLDPSCSGSGTASSRLDHLLPSHNADQDTDTERLNKLAAFQRKALTHALCFPAVERVVYSTCSTHQIENEDVIQSVLPVATSHGFQLATPFPQWPRRGLPVFEGSEHLLRTDPKVDGEGFFIALFVRKGTSDISEQPNRAEVAQCGAQVPMKIIRDRRRTRVVPYTPVKMYKMWSLLMWGNCGNRKTIRG* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01240 517 Gene3D Sun protein; domain 3 172 235 - -
Pte3g01240 517 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 50 456 IPR023267 GO:0001510
Pte3g01240 517 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 170 455 IPR001678 GO:0008168
Pte3g01240 517 PRINTS RNA (C5-cytosine) methyltransferase signature 325 337 IPR023267 GO:0001510
Pte3g01240 517 PRINTS RNA (C5-cytosine) methyltransferase signature 381 397 IPR023267 GO:0001510
Pte3g01240 517 PRINTS RNA (C5-cytosine) methyltransferase signature 437 454 IPR023267 GO:0001510
Pte3g01240 517 PRINTS RNA (C5-cytosine) methyltransferase signature 227 241 IPR023267 GO:0001510
Pte3g01240 517 PRINTS RNA (C5-cytosine) methyltransferase signature 256 266 IPR023267 GO:0001510
Pte3g01240 517 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 178 455 IPR029063 -
Pte3g01240 517 Gene3D Vaccinia Virus protein VP39 236 460 IPR029063 -
Pte3g01240 517 Pfam 16S rRNA methyltransferase RsmB/F 245 452 IPR001678 GO:0008168
Pte3g01240 517 MobiDBLite consensus disorder prediction 1 39 - -
Pte3g01240 517 CDD AdoMet_MTases 255 336 - -
Pte3g01240 517 FunFam Methyltransferase NSUN5, putative 236 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01240 Pte-Chr3 10608764 10614159 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01240 K15264 - qsa:O6P43_019128 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01240 3 10608764 10614159 Pte3g01240 3 10608764 10614159 RCT