Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01232 ATGGATTCTTCACAGGGGTCTACCTTGTCGACAAATGTAGCAGGGTTCGTTGATACCTCGTCAGTACGTGGAGATGTGGCTTACCTTGATACGATGCCTGTATACGTTAAGGAGCTAATTGCTGGTGGAGTTGCTGGTGCATTAGCTAGGACGTCTGTTGCTCCTTTAGAACGGATTAAAATACTTTGGCAGACCAGAACTGACGGATTTCATTCTCTCGGTGTATACCCATCTATGAAAAAGTTAGTAAAGCACGAAGGGTTTCTAGGACTGTACAAAGGAAATGGAGCTAGTATTATTCGGATCGTTCCATATGCAGCCTTGCACTTTATGACTTACGAGCGTTACAAATGTTGGATCTTAAATAACTGTCCTCAAGTAGGATCAGGTCCTATAGTTGATCTGTTAGCTGGCTCTGCAGCTGGGGGAACCTCTGTTTTGTGCACATACCCGCTAGACCTTGCTCGCACGAAACTTGCTTATCAGGTAGTAGACAAGAAGGGAAGCCTCAAAGAGGGAATGAAGAATTTCCGTACACAACCTGCGTTCAATGGCATTAAAGATGTCCTTACAAGTGGCTATAGAGAAGGTGGAGTGCGTGGACTATATCGAGGTGTAGGTCCAACAGTTGCTGGCATTCTCCCTTATGCTGGTTTAAAATTCTACTTGTATGAGGAACTGAAGATTCATGTTCCCGAAGAACATAAGAAGTCAATTTGGATGCGTCTTTGTTGTGGTGCTCTGGCTGGCTTATTTGGACAAACAGTAACATATCCTTTGGATGTGGTCAAGAGACAGATGCAGCATTGTAGCAGCATACAAACGCAGTTAAAAATTCATAATGATCCGAGTCTATTGCTACAGGTGGGAACCTTGGAAGGTGATGCCAAATATAGGAATACATTGGAGGGACTATCAACTATTTTTCGTAATCAAGGATGGAGACAATTGTTTTCAGGCGTAAGCATTAATTATATCAGGATTGTTCCTTCAGCAGCAATCAGTTTCACAACATACGATATGATGAAGGCATGGCTTTCTGTAAAAACTGACAAGTCTCCGTCATCGTCATGA 1074 0.4292 MDSSQGSTLSTNVAGFVDTSSVRGDVAYLDTMPVYVKELIAGGVAGALARTSVAPLERIKILWQTRTDGFHSLGVYPSMKKLVKHEGFLGLYKGNGASIIRIVPYAALHFMTYERYKCWILNNCPQVGSGPIVDLLAGSAAGGTSVLCTYPLDLARTKLAYQVVDKKGSLKEGMKNFRTQPAFNGIKDVLTSGYREGGVRGLYRGVGPTVAGILPYAGLKFYLYEELKIHVPEEHKKSIWMRLCCGALAGLFGQTVTYPLDVVKRQMQHCSSIQTQLKIHNDPSLLLQVGTLEGDAKYRNTLEGLSTIFRNQGWRQLFSGVSINYIRIVPSAAISFTTYDMMKAWLSVKTDKSPSSS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01232 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 33 119 IPR018108 -
Pte3g01232 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 129 230 IPR018108 -
Pte3g01232 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 237 345 IPR018108 -
Pte3g01232 357 PRINTS Mitochondrial carrier protein signature 38 51 IPR002067 GO:0055085
Pte3g01232 357 PRINTS Mitochondrial carrier protein signature 94 114 IPR002067 GO:0055085
Pte3g01232 357 PRINTS Mitochondrial carrier protein signature 51 65 IPR002067 GO:0055085
Pte3g01232 357 PRINTS Mitochondrial carrier protein signature 144 162 IPR002067 GO:0055085
Pte3g01232 357 PRINTS Mitochondrial carrier protein signature 246 268 IPR002067 GO:0055085
Pte3g01232 357 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Pte3g01232 357 Pfam Mitochondrial carrier protein 237 347 IPR018108 -
Pte3g01232 357 Pfam Mitochondrial carrier protein 35 122 IPR018108 -
Pte3g01232 357 Pfam Mitochondrial carrier protein 131 231 IPR018108 -
Pte3g01232 357 SUPERFAMILY Mitochondrial carrier 35 341 IPR023395 -
Pte3g01232 357 Gene3D Mitochondrial carrier domain 32 352 IPR023395 -
Pte3g01232 357 PANTHER SOLUTE CARRIER FAMILY 25 36 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01232 Pte-Chr3 10506992 10510807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01232 117 343 Organic Solute Cotransporters AT4G26180 27.468 6.17e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01232 - - qsa:O6P43_015886 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01232 3 10506992 10510807 Pte3g01232 3 10506992 10510807 RCT