Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01178 ATGTATTGTAGTAGTGTTAATTATACTTGTTATTTCATTGACTCTTGTCTCTACCCCGTGAGCGACTTTGGGATATCAGGAGGAAGAAATGTTGTAAATACCAAGTTTTTAACAAATGGATCTGTGGAAAATAGGAAAAAAAATGGGAAAAAGCAACTGGGTTTCTCTAGTGTTGGGATAAGGTGTTCAAATGTGGTCGGAGTGCCGAGGGAGAAGAGAAAAAATGCAGTGTCGTCTGAAGAGGTTGTTAGGACGCTTAAGTCATTTCCCAACCCAAATTCTGCGTTTTCTTACTTCAAATCAGTGGCCGATTTACCAAACGTCTTGCATACGACTGAGTCATGCAATTACATGCTCGATGTTTTAAGTGCTCATGAAAGGATAAGTGATATGGCTTACGTGTTTGATTTGATGCAAAAGAGAATTATAAACAGGCATCTGGATACTTACTTGATTATCTTCAGGAGTCTTTCTGTTAAAGGTGGAATAAGACAAGCACCATTTGCACTAAAAAAGATGAGGAAAGCTGGGTTCATCTTAAATGCTTACTCATATAATGGTCTGATTCATTTGCTACTCAAATCTAAGTTTGTTAAAGAAGCTATGGACGTATATAAAGTCATGGTCTTAGAAGATATTAAGCCAAGCATGAAGACTTACTCAGCTCTTATGGTGGCATTGGGAAAGAGAAAGGATACAGACACTATTGTGCTTTTGTTGAAAGAGATGGATACTCTGGGACTTAAGCCAAATATCTATACATTTACTATTTGCATTAGAGCATTGGGTAAAGCTGGAAAAATTGATGATGCTTACCAGATATTGAAGAGAATGAATGATGAGGGATGTGGTCCTGATGTTATTACCTATACGGTTCTCATTGATGCTGTATGTAATGCAGGCAAACTTGATAAAGCCAAGGAACTGTATGCTCAAATGAAGGCTACCCGTCATAAACCTGATCGAGTAACTTATATCACTTTGATGAACAAGTTTGGTGACTGTGGAGATCTACATGCTGTGAACAAATTCTGGAGCGAGATGGAAGCTGACGGTTATGCTCCAGATGTGGTCACGTACACCATTCTTATTGATGCTTCATTGAAATCTGGGAGAGTTGACGAAGCATTTGGTGTCTTGGATGTCATGAGGAAGAATGGAGTTTCCCCGAATCTTCATACTTGCAACACTTTGATATGTGGACTTTTGAAGTTAAGGAAGTTAGGAAAGGCGTTAGATCTATTCTACAATATGGAATTTATGGGTGTTGAACCTACTGCATACACATACATCCTTTTCATTGACTACTATGGAAAATCAGGTGACACTGAGAAGGCTCTTGAGACATTTGAAATGATGAAAGTTAGAGGAATTGTGCCAGATGTAGTAGCTTGCAATGCATCTTTGCACACTCTTGCTGCATCTGGCCGTATAGAAGAAGCAAAAGACATATTTAATGGCCTAAAAAACTGTGGTCTTTCTCCTGACGCAGTAACATATACCAATATGATGAAGTGCTATAATAAAATTGGACAAGTGGATGAAGCTGTGAAACTTCTAGCTGAAATGATGGACCATGGATGCGAACCTGATGTCATTATCATGAATTCTCTCATCGACACACTTTACAAGGCTGACAGAGTTGAGGATGCCTGGAAAATGTTTTGCAGAATGAAGGACATGAAGCTCACTCCTACTGTTGTGACATACAATACTTTAATTACTGGCTTGGGGAATGAAGGGAAAGTCCAGAAAGCTGTTGAATTGTTTGAGAATATGACAGAGTATGGATGTCCTCCAAACACAATTACTTTCAATGCGCTACTAGACTGTCTCTGTAAGAACGAGAAAGTTGAGTCTGCCTTGACAGCATTTTGTAGAATGACAACTATGAACTGCAGTCCTGATGTTTTTACATACAACATTGTAATTAATGGCCTTATAAAAGAAAAGAAAATTGATGATGCCTTTTGGTTTTTTCATCAGATGACGAAAGTACTTTACCCTGATCATGTAACTTTGTTTACCATTCTTCCTAGCTTTATAAACTATAGGCAGGTTGAAGATGCTGTCAAAATTGTTCAGGAATTTGTATATCAAATTAGAGATAAGGTGGGAAAATTTTTCTGGAAAGATCTAATGGAAGGAATTATACATGAAGCTGGAGTTGAAAAAGCAAGCAAGTTTGCTGAAAGGTTAGTAAGTAATAAGATTTGCCAAGATGACTCTGTGTTACTACCTCTAATAAAACATTTGTGTAAGCATGCAAAGGTCCTTGATGCTCATAATTTGTTTCAGAACTTCACCGAATCCTTGGGTATTCGAGCATCACTAGAATCATATAGTTGTTTACTTGATGGTCTTCTTCAAGGTGGTGTCACTGAAACATGTTGGGATCTCTTCCGGAAGATGAAGAATGCAGGTTATGTACCAGATCTTTTCACTTATAACATTCTACTCGATTCTTTAGGAAAATCTGGAAAGATTAATGCAATGTTTGAATTGCATGAAGAGATGCACCGGAGGGGATGTGAGTCTAATATAGTGACTCATAATATTGTTATCTCTGCTCTTGTGAAATCTAATAACTTGGATAAGGCAATTGATCGATACTATGATGTTGTTAGTGCTGAACTAATTCCCACTCCTTGCACCTACGGCCCTTTGATCGATGGTCTTTCAAAGTCTGGGAGGTTGGAGGAAGCAATGAACTTCTTTGAAGAGATGCGTGATTATGGATGCAGTCCAAATTGTGCTGTTTATAATATGCTCGTCAATGGGTTTGGCAAATCAGGAGATATAGAAATGGCATGTGGTTTATTCAAAAGAATGGTTAAAGAAGGAATAAGACCGGACTTAAAATCTTACACCATTCTCGTTGAATGCCTTTGCATGGAAGGGAAAGTTGAGGATGCTCTGCACTACTTTGAAGAATTGAAGTCCACTGGGATTGATCCGGATACTATATGCTACAATCTTATGATCGATGGACTTGGAAAATCAGGTCGGTTGGATGAAGCGTTCTCACTATTCTCTGAAATGTGCAGTCGAGGGGTTAGTCCTGATCTCTTTACGTACAATTCATTCATACACCATTTTGGATCAGCCGGAAGAATGGAGGAAGCTGGAAAGTTGTATAAGGAACTACAACATGCAGGTTTTGAACCAAATATTTTCACTTATAATGCTCTAATTCGAGGGTATAGTATGTCTGGAAATCCAGAGTCTGCCTTTGCAATTTACAAGGAGATGATGGTTGGGGGTTGTAATCCTAACATGGGAACTTTTGCTCAGCTTCCTAATTAA 3306 0.3838 MYCSSVNYTCYFIDSCLYPVSDFGISGGRNVVNTKFLTNGSVENRKKNGKKQLGFSSVGIRCSNVVGVPREKRKNAVSSEEVVRTLKSFPNPNSAFSYFKSVADLPNVLHTTESCNYMLDVLSAHERISDMAYVFDLMQKRIINRHLDTYLIIFRSLSVKGGIRQAPFALKKMRKAGFILNAYSYNGLIHLLLKSKFVKEAMDVYKVMVLEDIKPSMKTYSALMVALGKRKDTDTIVLLLKEMDTLGLKPNIYTFTICIRALGKAGKIDDAYQILKRMNDEGCGPDVITYTVLIDAVCNAGKLDKAKELYAQMKATRHKPDRVTYITLMNKFGDCGDLHAVNKFWSEMEADGYAPDVVTYTILIDASLKSGRVDEAFGVLDVMRKNGVSPNLHTCNTLICGLLKLRKLGKALDLFYNMEFMGVEPTAYTYILFIDYYGKSGDTEKALETFEMMKVRGIVPDVVACNASLHTLAASGRIEEAKDIFNGLKNCGLSPDAVTYTNMMKCYNKIGQVDEAVKLLAEMMDHGCEPDVIIMNSLIDTLYKADRVEDAWKMFCRMKDMKLTPTVVTYNTLITGLGNEGKVQKAVELFENMTEYGCPPNTITFNALLDCLCKNEKVESALTAFCRMTTMNCSPDVFTYNIVINGLIKEKKIDDAFWFFHQMTKVLYPDHVTLFTILPSFINYRQVEDAVKIVQEFVYQIRDKVGKFFWKDLMEGIIHEAGVEKASKFAERLVSNKICQDDSVLLPLIKHLCKHAKVLDAHNLFQNFTESLGIRASLESYSCLLDGLLQGGVTETCWDLFRKMKNAGYVPDLFTYNILLDSLGKSGKINAMFELHEEMHRRGCESNIVTHNIVISALVKSNNLDKAIDRYYDVVSAELIPTPCTYGPLIDGLSKSGRLEEAMNFFEEMRDYGCSPNCAVYNMLVNGFGKSGDIEMACGLFKRMVKEGIRPDLKSYTILVECLCMEGKVEDALHYFEELKSTGIDPDTICYNLMIDGLGKSGRLDEAFSLFSEMCSRGVSPDLFTYNSFIHHFGSAGRMEEAGKLYKELQHAGFEPNIFTYNALIRGYSMSGNPESAFAIYKEMMVGGCNPNMGTFAQLPN* 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1022 1056 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 987 1021 IPR002885 -
Pte3g01178 1101 Pfam PPR repeat 527 559 IPR002885 -
Pte3g01178 1101 Pfam PPR repeat 879 910 IPR002885 -
Pte3g01178 1101 Pfam PPR repeat 631 664 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Pte3g01178 1101 Pfam Pentacotripeptide-repeat region of PRORP 169 319 IPR033443 -
Pte3g01178 1101 SUPERFAMILY HCP-like 890 1084 - -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1057 1091 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 666 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 882 916 IPR002885 -
Pte3g01178 1101 SUPERFAMILY TPR-like 580 978 IPR011990 GO:0005515
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 847 881 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 952 986 IPR002885 -
Pte3g01178 1101 Gene3D Tetratricopeptide repeat domain 966 1100 IPR011990 GO:0005515
Pte3g01178 1101 Gene3D Tetratricopeptide repeat domain 232 351 IPR011990 GO:0005515
Pte3g01178 1101 Gene3D Tetratricopeptide repeat domain 705 864 IPR011990 GO:0005515
Pte3g01178 1101 Pfam PPR repeat family 916 964 IPR002885 -
Pte3g01178 1101 Pfam PPR repeat family 1056 1096 IPR002885 -
Pte3g01178 1101 Pfam PPR repeat family 460 507 IPR002885 -
Pte3g01178 1101 Pfam PPR repeat family 811 860 IPR002885 -
Pte3g01178 1101 Pfam PPR repeat family 565 614 IPR002885 -
Pte3g01178 1101 Pfam PPR repeat family 355 394 IPR002885 -
Pte3g01178 1101 Pfam PPR repeat family 986 1030 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 917 951 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Pte3g01178 1101 SUPERFAMILY TPR-like 184 558 IPR011990 GO:0005515
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Pte3g01178 1101 Pfam Mitochondrial ATPase expression 662 715 IPR024319 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 777 811 IPR002885 -
Pte3g01178 1101 Pfam PPR repeat 428 458 IPR002885 -
Pte3g01178 1101 Pfam PPR repeat 323 352 IPR002885 -
Pte3g01178 1101 Pfam PPR repeat 780 808 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 358 391 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 849 882 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 603 637 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 780 812 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 219 252 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 253 287 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 464 497 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 1024 1058 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 536 566 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 428 462 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 989 1022 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 288 321 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 638 664 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 183 216 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 393 426 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 498 532 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 568 602 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 323 357 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 884 918 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 814 847 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 955 988 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 1059 1092 IPR002885 -
Pte3g01178 1101 NCBIfam pentatricopeptide repeat 920 952 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 812 846 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Pte3g01178 1101 Gene3D Tetratricopeptide repeat domain 525 596 IPR011990 GO:0005515
Pte3g01178 1101 Gene3D Tetratricopeptide repeat domain 381 453 IPR011990 GO:0005515
Pte3g01178 1101 Gene3D Tetratricopeptide repeat domain 454 524 IPR011990 GO:0005515
Pte3g01178 1101 Gene3D Tetratricopeptide repeat domain 865 965 IPR011990 GO:0005515
Pte3g01178 1101 Gene3D Tetratricopeptide repeat domain 69 231 IPR011990 GO:0005515
Pte3g01178 1101 Gene3D Tetratricopeptide repeat domain 597 704 IPR011990 GO:0005515
Pte3g01178 1101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Pte3g01178 1101 PANTHER ATPASE EXPRESSION PROTEIN 3 242 584 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g01178 387 880 Glycosyltransferase AT1G05670 24.597 2.82e-46 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01178 - - qsa:O6P43_015774 1543.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01178 3 10045241 10049135 Pte3g01178 3 10045241 10049135 RCT