Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g01109 ATGGCTTTGCCTAATCAACAAACCGTAGATTACCCCAGTTTCAAGCTCGTAATTGTTGGTGATGGGGGTACAGGAAAGACAACCTTCGTGAAAAGGCATCTTACTGGGGAGTTTGAAAAGAAATATGAACCAACCATCGGAGTAGAAGTGCACCCACTCGATTTTTTCACCAACTGCGGAAAGATTAGGTTCTACTGCTGGGACACAGCTGGGCAGGAGAAATTCGGTGGTCTTCGCGATGGATACTATATTCATGGGCAGTGCGCAATTATCATGTTTGATGTTACTGCTCGGTTGACATACAAGAATGTTCCAACATGGCATCGTGATCTTTGCCGTGTTTGTGAAAATATTCCTATAGTTCTCTGCGGCAACAAGGTTGATGTTAAGAACAGGCAGGTGAAGGCTAAGCAGGTGACTTTCCACAGAAAGAAGAACCTGCAATACTATGAGATATCTGCCAAGAGCAACTACAACTTTGAGAAGCCTTTTCTATACCTCGCTAGGAAACTTGCTGGGGACGCCAACCTCCATTTTGTAGAATCTCCTGCCCTTGCTCCACCAGAAGTGCATATTGACTTAGCTGCACAGCAACAGCATGAGGCAGAGCTCGCTGCAGCAGCAAGTCAACCCCTTCCAGATGATGATGACGAGGCATTTGAGTAG 666 0.4595 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDEAFE* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g01109 221 Gene3D - 4 219 IPR027417 -
Pte3g01109 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 74 92 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pte3g01109 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 168 190 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pte3g01109 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 94 115 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pte3g01109 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 130 148 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pte3g01109 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 27 41 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pte3g01109 221 FunFam GTP-binding nuclear protein 5 219 - -
Pte3g01109 221 CDD Ran 14 179 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pte3g01109 221 Pfam Ras family 15 171 IPR001806 GO:0003924|GO:0005525
Pte3g01109 221 SMART rho_sub_3 16 170 IPR001806 GO:0003924|GO:0005525
Pte3g01109 221 SMART ran_sub_2 19 220 - -
Pte3g01109 221 PANTHER RAN GTPASE 1 218 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pte3g01109 221 ProSiteProfiles small GTPase Ran family profile. 7 171 IPR002041 GO:0003924|GO:0005525|GO:0006913
Pte3g01109 221 ProSiteProfiles small GTPase Ras family profile. 5 205 IPR001806 GO:0003924|GO:0005525
Pte3g01109 221 MobiDBLite consensus disorder prediction 201 221 - -
Pte3g01109 221 ProSiteProfiles small GTPase Rab1 family profile. 8 221 - -
Pte3g01109 221 SMART rab_sub_5 14 174 - -
Pte3g01109 221 NCBIfam small GTP-binding protein domain 14 164 IPR005225 GO:0005525
Pte3g01109 221 SMART ras_sub_4 11 174 - -
Pte3g01109 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 190 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g01109 Pte-Chr3 9475565 9477610 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g01109 K07936 - tcc:18588700 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01109 3 9475565 9477610 Pte3g01109 3 9475565 9477610 RCT
Pte3g01109 3 9475565 9477610 Pte1g02359 1 44377996 44379892 RCT