Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00563 ATGTGTCCTTCGGGAAGAAGCCTCCATGATTCTTCTTCTTCTATGTCTTGCCTCGGCGCCGGAACCTTTGGTTTCCGGACGGCATTTGACGTGCTTGATGCTGACAGAGACGGCAAGATAAGTAGGGATGATCTTCGGACATTCTACTCTGGTTTTTTGCGGAGCGCGGATGGGAACGGCGAAGAAAGCGAGATCACTCCAGATGAAGACGATGTCATTGGTTCGATGATGACTGTGGCGGATTTTAACAACAACGGGTTCGTGGAGTACGAGGAGTTTGAGCAAATTTTGTTGGGTGGGTCAAGAAATGGCGTCAAGATCTCTTTGGGTTTTGGAGTAATGGAGGATGTGTTTCGAGTAATGGACAAGGATGGGGATGGCAAGCTCACTCACAATGATTTGAAGAGTTACATGGAGTCAGCTGGGTTTCCTACTAGCGATGAAGATATTATGGCCATGATTAAACTCGGGGGTGGAGATGATAATGGAGTCACTTTTGATGGTTTGCTTAAAATATTGGCTGTTTGA 528 0.4659 MCPSGRSLHDSSSSMSCLGAGTFGFRTAFDVLDADRDGKISRDDLRTFYSGFLRSADGNGEESEITPDEDDVIGSMMTVADFNNNGFVEYEEFEQILLGGSRNGVKISLGFGVMEDVFRVMDKDGDGKLTHNDLKSYMESAGFPTSDEDIMAMIKLGGGDDNGVTFDGLLKILAV* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00563 175 Pfam EF-hand domain pair 26 96 IPR002048 GO:0005509
Pte3g00563 175 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Pte3g00563 175 SUPERFAMILY EF-hand 23 172 IPR011992 -
Pte3g00563 175 CDD EFh 115 174 IPR002048 GO:0005509
Pte3g00563 175 Gene3D - 113 174 - -
Pte3g00563 175 Gene3D - 10 99 - -
Pte3g00563 175 CDD EFh 25 93 IPR002048 GO:0005509
Pte3g00563 175 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Pte3g00563 175 ProSitePatterns EF-hand calcium-binding domain. 122 134 IPR018247 -
Pte3g00563 175 PANTHER CALCIUM BINDING PROTEIN 115 163 - -
Pte3g00563 175 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
Pte3g00563 175 SMART efh_1 113 141 IPR002048 GO:0005509
Pte3g00563 175 SMART efh_1 24 52 IPR002048 GO:0005509
Pte3g00563 175 SMART efh_1 72 100 IPR002048 GO:0005509
Pte3g00563 175 ProSiteProfiles EF-hand calcium-binding domain profile. 109 144 IPR002048 GO:0005509
Pte3g00563 175 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
Pte3g00563 175 Pfam EF hand 114 140 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00563 Pte-Chr3 4401082 4402145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00563 1 176 EF-hand Containing Proteins AT5G49480 48.066 1.00e-44 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00563 K02183 - qsa:O6P43_003687 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00563 3 4401082 4402145 Pte3g00563 3 4401082 4402145 RCT