Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00401 ATGGCGACGCAGGAAGCAAATCCTGCCTCTGCTCCCAGCGCTGAAGTTGTTGGTCATGCCTTTGTGGAACAGTATTACCACATTCTGCACCAATCTCCGGACTTGGTACATAGATTTTATCAGGATTCAAGTTTCCTAAGCCGCCCAGACAGCAATGGTGTCATGACAACAGTGACAACCATGCAAGCAATAAATGAAAGGATTTTGTCCCTGAATTACAAAGACTACACCGCAGAAATAAAAACTGCTGATGCTCAGGAGTCGTATGAGAAGGGTGTCATTGTTTTAGTATCTGGATGCTTGACTGGGAAGGATGGACTGGGAAAGAGGTTTACGCAAACATTCTTTCTAGCTCCACAAGATAAAGGTTACTATGTCTTAAATGATGTTTTCAGGTTTGTGGAGGAGTACGATGTGTTGCAGGTTAACACTGTCTCACCAAATACTATGAATGAAAATTCTGAGACAACTGAAGTAGTTATAGAATCAGAGGTTATTATTACTCCTGATCCTGTTGTGGTGGAGTCCTCAAATCCCATTGAGGGTGAAAATCTTGACAATGGTGGTGAAGTTTGTGATCCTTCAGAGAATGAGGAAGAAAAATCTGTTATTGAAGAAGAGGTTGTTGAAACTTCTGTTCATGTTACTCCGAATGAGGATGTCTCTGGTGGTGATCCTGCTCCAGCACAGGACGATGCCCCTAAGAAGTCATATGCCTCAATTGTCAAAGTTATGAAAAATATTGCTGTATCTCATCCTGTGCATCCTTCTGCCCGCAACATACATGTGGCATCTGCAAAGACTGGACAGCAACTGCCTCCTGCTGGAAAGGCTTCTCATGTTCCTGCGGTGTCAGCTCCTACTACTGATAGTTCCATTCTTAACGAGGAAGTCGAGGGTCATTCCATATATGTACGGAATTTACCATATGATGCAACTGCCGAACAACTGGAGGCAGTGTTTAAGAAATTTGGGCCTATCAAACGTGATGGCATTCAAGTCAGAAGTAGTAAGCAGCAGGGATTCTGTTTTGGCTTTGTGGAATTTGAAGAACTGAGTTCAATGCGGGATGCACTTGAGGCGTCTCCTATCCAAATCGGTGAACGGCAAGCTGTGATTGAGGAGAAGAGGACTACTACTCGAGTTAGTGGCAGTGGGAGAGGGAGATACCCCTCTGGAAGAGGTGGGTTTCGCAACGAGAGTTACAGAGGTGGTCGTGGAAAATTTGGCGGTGGCCGGGGTTATGTCAGAAATGAATTCAAGAACCAAGAGTATTCAGGGCGACCTCGGGGATCTGCAGCAAATAGTGAGGGATCTCAACGGACTACCCAGAATGGAGGTGGTCGCACTGGTCGTCAAAGTTCAACACCTTCCACTTGA 1380 0.4522 MATQEANPASAPSAEVVGHAFVEQYYHILHQSPDLVHRFYQDSSFLSRPDSNGVMTTVTTMQAINERILSLNYKDYTAEIKTADAQESYEKGVIVLVSGCLTGKDGLGKRFTQTFFLAPQDKGYYVLNDVFRFVEEYDVLQVNTVSPNTMNENSETTEVVIESEVIITPDPVVVESSNPIEGENLDNGGEVCDPSENEEEKSVIEEEVVETSVHVTPNEDVSGGDPAPAQDDAPKKSYASIVKVMKNIAVSHPVHPSARNIHVASAKTGQQLPPAGKASHVPAVSAPTTDSSILNEEVEGHSIYVRNLPYDATAEQLEAVFKKFGPIKRDGIQVRSSKQQGFCFGFVEFEELSSMRDALEASPIQIGERQAVIEEKRTTTRVSGSGRGRYPSGRGGFRNESYRGGRGKFGGGRGYVRNEFKNQEYSGRPRGSAANSEGSQRTTQNGGGRTGRQSSTPST* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00401 459 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Pte3g00401 459 SMART rrm1_1 302 374 IPR000504 GO:0003723
Pte3g00401 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 361 IPR000504 GO:0003723
Pte3g00401 459 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Pte3g00401 459 SUPERFAMILY RNA-binding domain, RBD 296 408 IPR035979 GO:0003676
Pte3g00401 459 Gene3D - 7 137 - -
Pte3g00401 459 MobiDBLite consensus disorder prediction 428 459 - -
Pte3g00401 459 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 13 435 IPR039539 -
Pte3g00401 459 MobiDBLite consensus disorder prediction 174 201 - -
Pte3g00401 459 MobiDBLite consensus disorder prediction 376 459 - -
Pte3g00401 459 FunFam Nuclear transport factor 2 family protein 8 137 - -
Pte3g00401 459 MobiDBLite consensus disorder prediction 215 235 - -
Pte3g00401 459 Gene3D - 288 417 IPR012677 -
Pte3g00401 459 CDD RRM_SF 303 361 - -
Pte3g00401 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 378 IPR000504 GO:0003723
Pte3g00401 459 FunFam Ras GTPase-activating protein-binding protein 1 289 418 - -
Pte3g00401 459 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Pte3g00401 459 CDD NTF2 13 135 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00401 Pte-Chr3 3327183 3330968 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00401 K24983 - qsa:O6P43_022919 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00401 3 3327183 3330968 Pte3g00401 3 3327183 3330968 RCT