Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00301 ATGTCTAAGTTGCATTGCTCTCTTGTTCTAGCCTTTTTGTTGGGTCATGCCTTTGCCAGTTCTAATGCTGAGAAAAGAATTGGAATCTATGAACTGAAGAAGGGGGACTTCACTGTGACCCTCACCAACTATGGTGCTACTGTGCTCTCCTTCATAATCCCAGACAAGCATGGAAAATTATCTGATATTGTTCTTGGGTTTGAAGATTTTCAGAACTACATTGTGGTCATCATACGATACTCCTCCCGTCTTCTATTTTTTTTTTTTTTTAAATTCCAAGTTTTCTGTTTGTATTTTGTTTCGGTGCCATATACCTATAAGATTCGTACAATGATGCAGAATGACACAACTTACTTTGGAGCCCTTGTTGGCCGTGTTGCCAATAGAATTGGTGGAGCAAAATTTACTCTGAATGGCGTGCAATATAAATTGTTCGCTAATGATGGCAACAACACTCTCCATGGTGGCCATAGAGGATTCAGTAATGTTATATGGACATTAAAGAGCCATAAGAAAGATAGTCATATAACCTTCACCTATGACAGTTTTGATGGAGAAGAAGGATTTCCTGGGGCTCTTTCTGTTGAAGTGACATATATGATCATTGGAACTAACAAGTGGGGTGTGAAGATGTTAGCCAGGCCACACAACAAGGCTACTCCTGTTAATTTAGCTCAACACACGTACTGGAATCTACATGGACATAACACCGGGGATATTCTTTCTCACAAAATTCAACTTTATGCATCACACATCACTCCTGTTGATTCTCATCTTATTCCCACTGGTGAAATCACCTCTGTTAAAGGCACCCCTTATGATTTTCTCCAACCATATGAAATTGGTAGTAGGATAAACGAGGTCTCTCCTGGGTATGATATCAACTATGTAATTGATCGTTATAACAAAAAGCATCTGAATAAAGTTGCAATTGTGGAGGATTGGATCTCTGGAAGGAAGATGGAACTGTGGACAAATCAACCTGGAGTACAGTTCTACACTGGTAACTTCTTGAAAGATGTGAAGGGCAAGGGAGGAGTCATTTATGAAAACCATGATGGCTTTTGCCTTGAGACACAAGGATTCCCAGATTCTGTAAATCACCCTAACTTCCCTTCCCAGATTGTAAACCCAGGAGAGACTTATGAACATATCATGGTACATAGATTCACAGCTAAATAG 1182 0.3968 MSKLHCSLVLAFLLGHAFASSNAEKRIGIYELKKGDFTVTLTNYGATVLSFIIPDKHGKLSDIVLGFEDFQNYIVVIIRYSSRLLFFFFFKFQVFCLYFVSVPYTYKIRTMMQNDTTYFGALVGRVANRIGGAKFTLNGVQYKLFANDGNNTLHGGHRGFSNVIWTLKSHKKDSHITFTYDSFDGEEGFPGALSVEVTYMIIGTNKWGVKMLARPHNKATPVNLAQHTYWNLHGHNTGDILSHKIQLYASHITPVDSHLIPTGEITSVKGTPYDFLQPYEIGSRINEVSPGYDINYVIDRYNKKHLNKVAIVEDWISGRKMELWTNQPGVQFYTGNFLKDVKGKGGVIYENHDGFCLETQGFPDSVNHPNFPSQIVNPGETYEHIMVHRFTAK* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00301 393 Pfam Aldose 1-epimerase 113 387 IPR008183 GO:0005975|GO:0016853
Pte3g00301 393 SUPERFAMILY Galactose mutarotase-like 24 79 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pte3g00301 393 PANTHER ALDOSE-1-EPIMERASE 26 391 - -
Pte3g00301 393 PIRSF GALM 13 79 IPR015443 GO:0016853|GO:0019318
Pte3g00301 393 PIRSF GALM 100 393 IPR015443 GO:0016853|GO:0019318
Pte3g00301 393 SUPERFAMILY Galactose mutarotase-like 111 390 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pte3g00301 393 Gene3D - 100 392 IPR014718 GO:0030246
Pte3g00301 393 Gene3D - 13 85 IPR014718 GO:0030246
Pte3g00301 393 CDD galactose_mutarotase_like 30 390 IPR047215 GO:0016853
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00301 Pte-Chr3 2485464 2487127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00301 2 392 Miscellaneous Gene Families AT3G47800 58.056 8.17e-162 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00301 K01785 - qsa:O6P43_022818 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00301 3 2485464 2487127 Pte2g02324 2 42912729 42914531 RCT
Pte3g00301 3 2485464 2487127 Pte3g00301 3 2485464 2487127 RCT