Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00262 ATGGCTTTGAGGTTCATCAAGTGTGTGACTGTTGGAGATGGGGCTGTTGGCAAGACCTGCATGCTTATTTGCTATACCAGCAACAAATTCCCTACGGATTACGTTCCCACGGTGTTTGATAACTTCAGCGCAAATGTCGTCGTTGACGGCATGACTGTCAATTTAGGACTCTGGGACACAGCTGGACAAGAAGATTACAATAGATTAAGGCCTTTGAGCTATAGAGGTGCAGATGTATTTGTACTGGCTTTCTCTTTGGTCAGTCGTGCAAGCTACGAGAATGTGTTGAAAAAGTGGATCCCAGAACTTCAGCATTATGCCCCTGGCATCCCATTGGTACTTGTTGGAACAAAAGTGGATCTTCGTGACGACAAACATTACCTGGCTGACCATCCTGGCCTTGTTCCAGTGACTGCTGCTCAGGGTGAGGAACTCAAGAAACAGATCGGCGCTGCATATTATATAGAATGCAGCTCAAAAACTCAGCAGAATGTCAAAGCAGTCTTTGATGCTGCAATCAAGGTAGTCATCAAACCACCACAGAAGCAGAAAGAGAAGAAGTACCGGCGTGGTGGATGTTTTCTAAATGTGCTTTGCGGGCGGAATGTGGTTCGTCTGAAATGA 624 0.4599 MALRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVFDNFSANVVVDGMTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYAPGIPLVLVGTKVDLRDDKHYLADHPGLVPVTAAQGEELKKQIGAAYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKYRRGGCFLNVLCGRNVVRLK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00262 207 SMART rho_sub_3 8 179 IPR001806 GO:0003924|GO:0005525
Pte3g00262 207 ProSiteProfiles small GTPase Rho family profile. 1 176 - -
Pte3g00262 207 NCBIfam small GTP-binding protein domain 6 170 IPR005225 GO:0005525
Pte3g00262 207 FunFam Rac-like GTP-binding protein 3 1 196 - -
Pte3g00262 207 PRINTS Transforming protein P21 ras signature 46 68 - -
Pte3g00262 207 PRINTS Transforming protein P21 ras signature 108 121 - -
Pte3g00262 207 PRINTS Transforming protein P21 ras signature 154 176 - -
Pte3g00262 207 PRINTS Transforming protein P21 ras signature 6 27 - -
Pte3g00262 207 PRINTS Transforming protein P21 ras signature 29 45 - -
Pte3g00262 207 Pfam Ras family 7 176 IPR001806 GO:0003924|GO:0005525
Pte3g00262 207 PANTHER RHO FAMILY GTPASE 4 187 IPR003578 GO:0005525|GO:0007264
Pte3g00262 207 SMART ras_sub_4 3 179 - -
Pte3g00262 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 176 IPR027417 -
Pte3g00262 207 ProSiteProfiles small GTPase Ras family profile. 1 198 IPR001806 GO:0003924|GO:0005525
Pte3g00262 207 Gene3D - 3 190 IPR027417 -
Pte3g00262 207 CDD Rop_like 5 177 - -
Pte3g00262 207 SMART rab_sub_5 6 179 - -
Pte3g00262 207 ProSiteProfiles small GTPase Rab1 family profile. 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00262 Pte-Chr3 2221204 2224429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00262 6 179 EF-hand Containing Proteins AT5G27540 26.286 1.32e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00262 K04392 - cit:102608421 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00262 3 2221204 2224429 Pte3g00262 3 2221204 2224429 RCT