Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00220 ATGGATCCAAACCCGAAAAGCTTCCCGCTACTTTCCTACGTCATGGCGCAACTGCCACTTTTAGGACCAGACCAACGAGGTGTTGATCTGACGACGCTGACCAGCTCATCAAGACAACCGCCAGAACCCTCCAGTTCTTCTTCGGGAGCAACAGACGATGAAATTGTGCACCAAATGCCCCAACTCAATAATCCAAAGCTATTGGAGTCTATGACGCGGGCAATCTTCCATGTGGCTGAAACTCGATCCGTTATTCGTGTGTTCGGGGAACGGCCCGATCATGCAGTGGTCGAGCAGGCTAAGGCTAAGCTGGAAGATATGGAAACTGTCGACAAAATCGGGCTCTCTCCTGGGCGTGGAGATGTGGATCGGCTACAATGGCGGGAAAATACGGGTATGAGAGATCAGATGGATACCATTACCAAGCGAGAAATGGAGAAGGAGAAGAAGTCGTACAAGGCGATCATCCAATTGCATGAGATGCATGACGCTTACGACAAGCTTTTGAAGGACTCGGAGCAGACATTGGTGAATATCTATGAGTCTGCAGGTGTGGATAAGAAGGAAGAAGGTTCAGAAAACTTGGAGGCGAAGGAGGAGGCGGTGGGTATACTGCAGGATGTGTCTGGAAATGGGTTGGAGTGGGCAGATCTTTCACGCAAGCACTTACGGCATCTCCCACAGGCAGTTGGCCGTATCCGTTCATTGCTGGTGCTCAATGTTTCATCAAATCAATTCAAGGCGATACCTGATTCAATTGGTTGGTTGGAAAAGCTTGAGGAGTTAAATTTGTCTTCAAACTTTATAGAATCTCTTCCCGATTCAATTGGCCTTTTGAAAAAGTTGAAGATCCTGAATGTATCTGGAAACAAGCTTCTGCTTCTTCCAGACACCATTTCTCTTTGCAGTTCATTAGAGGAATTGGATGCTAGCTACAACAAGCTGCAATATTTGCCAGTGGATATGGGACGAGGATTAGAAAAGCTACAGAGGCTCTTGATTCAAATGAACAAGATCCGTTACTTTCCTCCATCAATCTGTGAGATGAGGTCTTTGCGCTATCTGGATGCTCGCTTCAACGAACTCCGCGGACTGCCTGTTGCATTTGGGAAACTATCTAATCTGGAATATCTCAATCTGAGTAGTAACTTCAGCGACCTCAAAGCACTTCCAGAGACATTTGGTGTTCTTGTCAACCTTAGGGAGCTAGACCTTAGTCATAATCAGATTCATGCACTTCCAGATACGTTTGGCCATCTTCAAAATCTGGTCAAGCTGAATCTGGAGCATAATCCTCTTCTCACTCCTCCAATGGAAATTGTGAATCAAGGGGTTGAAGCTGTGAAGTCCTACATGGTCAAGCGGTGGCGCAATATACTCATTGACAAAGAGACCCAAAGCAAGCTCCAATCTCAATTTGAAAGTGGATGGCTCAATCGAGGCGCGTACTGGTTCAAACATGTTTCTGAGTATTTGGGACATAGGGATCCAAACGATCCTGTTCTGGAACAGCGACGATGA 1521 0.4642 MDPNPKSFPLLSYVMAQLPLLGPDQRGVDLTTLTSSSRQPPEPSSSSSGATDDEIVHQMPQLNNPKLLESMTRAIFHVAETRSVIRVFGERPDHAVVEQAKAKLEDMETVDKIGLSPGRGDVDRLQWRENTGMRDQMDTITKREMEKEKKSYKAIIQLHEMHDAYDKLLKDSEQTLVNIYESAGVDKKEEGSENLEAKEEAVGILQDVSGNGLEWADLSRKHLRHLPQAVGRIRSLLVLNVSSNQFKAIPDSIGWLEKLEELNLSSNFIESLPDSIGLLKKLKILNVSGNKLLLLPDTISLCSSLEELDASYNKLQYLPVDMGRGLEKLQRLLIQMNKIRYFPPSICEMRSLRYLDARFNELRGLPVAFGKLSNLEYLNLSSNFSDLKALPETFGVLVNLRELDLSHNQIHALPDTFGHLQNLVKLNLEHNPLLTPPMEIVNQGVEAVKSYMVKRWRNILIDKETQSKLQSQFESGWLNRGAYWFKHVSEYLGHRDPNDPVLEQRR* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00220 506 ProSiteProfiles Leucine-rich repeat profile. 399 420 IPR001611 GO:0005515
Pte3g00220 506 SMART LRR_typ_2 349 371 IPR003591 -
Pte3g00220 506 SMART LRR_typ_2 303 325 IPR003591 -
Pte3g00220 506 SMART LRR_typ_2 397 419 IPR003591 -
Pte3g00220 506 SMART LRR_typ_2 233 254 IPR003591 -
Pte3g00220 506 SMART LRR_typ_2 279 302 IPR003591 -
Pte3g00220 506 SMART LRR_typ_2 326 347 IPR003591 -
Pte3g00220 506 SMART LRR_typ_2 256 278 IPR003591 -
Pte3g00220 506 SMART LRR_typ_2 372 396 IPR003591 -
Pte3g00220 506 SMART LRR_typ_2 420 443 IPR003591 -
Pte3g00220 506 MobiDBLite consensus disorder prediction 28 52 - -
Pte3g00220 506 Gene3D Ribonuclease Inhibitor 126 317 IPR032675 -
Pte3g00220 506 Gene3D Ribonuclease Inhibitor 318 454 IPR032675 -
Pte3g00220 506 SUPERFAMILY L domain-like 210 438 - -
Pte3g00220 506 SMART LRR_bac_2 256 275 - -
Pte3g00220 506 SMART LRR_bac_2 279 298 - -
Pte3g00220 506 SMART LRR_bac_2 349 368 - -
Pte3g00220 506 SMART LRR_bac_2 302 321 - -
Pte3g00220 506 SMART LRR_bac_2 372 393 - -
Pte3g00220 506 SMART LRR_bac_2 397 416 - -
Pte3g00220 506 SMART LRR_bac_2 235 252 - -
Pte3g00220 506 Pfam Leucine rich repeat 328 383 IPR001611 GO:0005515
Pte3g00220 506 Pfam Leucine rich repeat 391 433 IPR001611 GO:0005515
Pte3g00220 506 Pfam Leucine rich repeat 258 315 IPR001611 GO:0005515
Pte3g00220 506 PANTHER - 212 340 - -
Pte3g00220 506 MobiDBLite consensus disorder prediction 25 52 - -
Pte3g00220 506 ProSiteProfiles Leucine-rich repeat profile. 258 279 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00220 Pte-Chr3 1923897 1925944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00220 212 442 Receptor kinase-like Gene Family AT5G07180 32.576 3.65e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00220 - - qsa:O6P43_030828 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00220 3 1923897 1925944 Pte3g00220 3 1923897 1925944 RCT