Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00208 ATGGCTTTTCAGTGTAACCCTGAGAAATGGCATAACCCTTCAATTATTTACCCACTGCAGTATGAACGATCTGTTTTTATCTGCAGGTCTTATGACATACCTAGCCATTTAACTGATCTTGAGAGGGAATTGGGTGACTTCTTTGATGATATCAAAAACAAGATTAGGTCGGGACAAAAAGATGATGCAATAGACCTGCTTCAAGCAAATTATGAGGTGGTGAAGGAACAGATGACTGCTGGGGCAAAAGGCATAGAAGAAGCTGCCGTTCTAGATGTTATAGCTCAGGGGTATGTGGCCGTTGGGGACACAAAATCTGTTGGTTCTGCATTAAACATGTTGAAGGAGGTAGTCATCAGCCTAAAGGATGGGGAGCCATGGCTAGATTCAATACTCCTACATATGGGAAGCATGTATTTTAATTTGGGCAAGTTTACACAATCTTTTTTCGCATACGAAAGGGCTGTTGGTATACTAGAGAATACTTATGGCAAGGGAAGTACATATCTTATCAGACCTCTGTTGGCAATGGCAAAAACCCTTAGTTCCCTTGGAAGAGACACCACAGCAGCTGATACGTACAAGCATGCAATTACTATTCTGGAATCTAGTAGAGGTGCTGAAAATGAGGACTTGGTGATACCTCTACTTGGCCTCGGAAATCTGTTGCTCAAAGGAGGGAAAGCCATGGATGCAGAAACTCAATTTAGTAGAGTTCTAAACATATATAAAGAGCAATATGGGCAGAAGGATGGTAGAGTTGGGATGGCTATGTTCTCCCTAGCTCATGCAAAGTGCGCAAAAGGAAATGTGGATGAAGCGATTGAATTGTACAGAGCTGCGCTTAAGATTATCGAGGATTCAAGGCACACTGCTTTTGATGATAGCATGGTGGAGAAGATGAGGATCGATTTGGCAGAATTATTCCATGCTGTTGGGAGAGGAAAAGAAGGTCGACAGCTTTTGGAGGAATGCTTGATAATAACAGAGAAACGCGAGGGAGAAGACCATCCTAGCGTAGCAAAACATATGATGAACCTTGCAGCTTCTTATTCAAACTCGAAGGATTACATTGAGGCGGAGAGGTTGCTCAGAAGAAGTCTACATATTATGCTGAAGAATGTCGCAGGTGATGACCCGGCCATTTCCTTTCCTATGCTACACCTTGCGGTTACTCTGTACCACATGCATAAGGATGAAGAAGCAGAGCAACTTGCACTTGAGGTTCTGCGCATCCGTGAGGAAGCCTTTGGTGAAGATTCTGTTCCCGTTGGAGAGGCTTTGGACTGTCTTGTTTCCATCCAGACAAGACTGGATAGGGACGAGAGCAAGTTACTTGAGCTGCTCGAGAGAATCCTTAGTATTCAAGAGAGGAAATTTGGATATGAGAGTCAGGAGGTGATGGGGACCCTGAAAAAAATAATATTTTATTTAGACAAATTGGGAAGAAAGAACGAGAAGTTTCCTCTGCAAAGACGATTATCAGTGCTTAAAATGAAGTACGAACAAATGGTTCATTAA 1521 0.4274 MAFQCNPEKWHNPSIIYPLQYERSVFICRSYDIPSHLTDLERELGDFFDDIKNKIRSGQKDDAIDLLQANYEVVKEQMTAGAKGIEEAAVLDVIAQGYVAVGDTKSVGSALNMLKEVVISLKDGEPWLDSILLHMGSMYFNLGKFTQSFFAYERAVGILENTYGKGSTYLIRPLLAMAKTLSSLGRDTTAADTYKHAITILESSRGAENEDLVIPLLGLGNLLLKGGKAMDAETQFSRVLNIYKEQYGQKDGRVGMAMFSLAHAKCAKGNVDEAIELYRAALKIIEDSRHTAFDDSMVEKMRIDLAELFHAVGRGKEGRQLLEECLIITEKREGEDHPSVAKHMMNLAASYSNSKDYIEAERLLRRSLHIMLKNVAGDDPAISFPMLHLAVTLYHMHKDEEAEQLALEVLRIREEAFGEDSVPVGEALDCLVSIQTRLDRDESKLLELLERILSIQERKFGYESQEVMGTLKKIIFYLDKLGRKNEKFPLQRRLSVLKMKYEQMVH* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00208 506 SUPERFAMILY TPR-like 210 410 IPR011990 GO:0005515
Pte3g00208 506 Gene3D Tetratricopeptide repeat domain 130 297 IPR011990 GO:0005515
Pte3g00208 506 Pfam Tetratricopeptide repeat 130 203 - -
Pte3g00208 506 Pfam Tetratricopeptide repeat 301 370 - -
Pte3g00208 506 Pfam Tetratricopeptide repeat 216 286 - -
Pte3g00208 506 SUPERFAMILY TPR-like 131 245 IPR011990 GO:0005515
Pte3g00208 506 ProSiteProfiles TPR repeat profile. 129 162 IPR019734 GO:0005515
Pte3g00208 506 ProSiteProfiles TPR repeat profile. 255 288 IPR019734 GO:0005515
Pte3g00208 506 Coils Coil 438 458 - -
Pte3g00208 506 Gene3D Tetratricopeptide repeat domain 298 504 IPR011990 GO:0005515
Pte3g00208 506 Pfam Tetratricopeptide repeat 386 421 - -
Pte3g00208 506 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 48 475 - -
Pte3g00208 506 SMART tpr_5 171 204 IPR019734 GO:0005515
Pte3g00208 506 SMART tpr_5 383 416 IPR019734 GO:0005515
Pte3g00208 506 SMART tpr_5 341 374 IPR019734 GO:0005515
Pte3g00208 506 SMART tpr_5 213 246 IPR019734 GO:0005515
Pte3g00208 506 SMART tpr_5 129 162 IPR019734 GO:0005515
Pte3g00208 506 SMART tpr_5 255 288 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00208 Pte-Chr3 1838573 1843818 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00208 - - qlo:115960872 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00208 3 1838573 1843818 Pte3g00208 3 1838573 1843818 RCT