Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00184 ATGCATTTTCCGGAACCAATGGAAACGGATAACTCTGCTTCCGCTATGGAAGACAGCTCCAAGAAACTTCAACTCCAGCACTCTCCCAATCAAAAAGTCGTTATCTTGGCTGACCTAAACGTCGATCCTCCTGAAACCGATGACGACGATTCTGCTCTAATATCAACTCCTAACTCTACCAGGTTGTCTAACGATGAAAATAGTCAGGACAAAGCTACATTATTGTGCAAAGAGACGGAGATTGCTGCTGAGGGTGATGGTAAAAGGTTAAGCAAAGTGGTGAAATGTCGTTCAAGACTCAGTAAAGTAGACTCAACTTTTGACTGTGGCATTGATGCTGACGGTGACCAGCCAAGCCAAGGGATTCAGTCTTCTCGTGAAGAAAAAGTCAGCAGTTTGAAAACGGGTTTGGTTCACGTTTCTAGGAAAATGCCAAAGAATGCTCATGCTCATTTCATACTTGGACTAATGTATCAAAGATTAGGGCAACCCCAAAAGGCAGCATTGGCATATGAGAAGGCAGAGGAAATCCTACTAGGGTCTGATTCTGAAATTGGTAGGCCAGAGTTGCTTGCATTGGTTCACATTCACCATGCACAGTGTCTTCTGCTTGAAACCTCATTGGAGAATAATTCCAATAAAGAACTAGAACCTGAAGAGGTTGAGGAAATCCTCTATAAGTTGAAAGAGTCAGTGCAATCAGATATCAGACAGGCAGCTGTTTGGAATACACTAGGTGTGATCCTTCTACAGAGTGGTCGTTTGCAGAGTGCTATATCCGTTTTTTCAACATTGTTGGTTGCTGCACCTGACAACTATGACTGCCTTGGAAACCTGGGTATTGCCTACCTCCAAAGCGGAAATTGGGATCTATCTGAAAGATATTTCCAAGATCTGATCCTTAAAGATCAAAACCATCCTTCTGCCTTGATCAACTATGCTGCCTTACTATTGTGCAAATATGGTTCTGTTGTTGCAGGTGCTGGAGCTAGTGCTGTGCAGAGTAGTGTGAAGGACCTGGCTTCGGCTGTAAGCACAGCAAAGGAATGTTTGCTGACAGCAGTAAAGGGAGATCCCAAAGCAGCACATATCTGGGCAAATCTTGCCAATGCATTTAACATGAGTGGAGATTATAGAAGTTCTGCGAAGTGCTTGGAGAAGGCAGCAAAACTGGAGCCTAACTGTATGGCCACTAGATATGCTGTTGCAAATCACCGAATCAAGGATGCTGAAAGGTCTCAAGATCCTAATGAACAGCTGTCATGGGCTGGAAATGAAATGGCCTCCATTATAAGAGATGGAGACTCTGCCACAGTTGAACGTCCTATTGCATGGGCTGGGCTAGCTATGGTTCACAAGGCTCAACATGAGATTGCTGCAGCATATGAAACTGAGAAGAGTGAGCTTAAGGAAGTGGAAGAGCATGCAATCTGCAGTTTGAAGCAGGCATTAGCAGAAGACCCAAATGATGCAGTGCAGTGGAACCAAATGGGACTTCATAGCCTTTGTGCTCAACATTTAAAAACATCGCAAAAATACCTTAAAACTGCCATTGCTAGGAATAGAGAATGTAGCTACTCATGGTCAAATCTAGGTGTCGCACTTCATCTCTCAGAGGACTCATCTCGAGCTGAAGAAGTATACAAGCAAGCATTGGAATTTGCAACAAGCGAAAATGCACATGCTATATTTTCAAACCTCGGAAATCTCTATCGACAGCAGAAAAAATATGAACGTGCCAAAGCAATGTTTACAAAGTCACTTGAACTACAACCTGGCTACGCTCCTGCATTCAATAATCTAGGTCTTGTATTTGTTGCAGAGGGTCAGTTGGAGGAGGCGAAGTATTGTTTTGACAAAGCCTTCCAAGCAGACCCCTTACTGGATTTAGCCAGATCTAACTTGATTAAAGCAACTGCTATCTCTAAGTTGTATGAAACTGGAAGCCCCTCTACTTCCTAA 1962 0.4343 MHFPEPMETDNSASAMEDSSKKLQLQHSPNQKVVILADLNVDPPETDDDDSALISTPNSTRLSNDENSQDKATLLCKETEIAAEGDGKRLSKVVKCRSRLSKVDSTFDCGIDADGDQPSQGIQSSREEKVSSLKTGLVHVSRKMPKNAHAHFILGLMYQRLGQPQKAALAYEKAEEILLGSDSEIGRPELLALVHIHHAQCLLLETSLENNSNKELEPEEVEEILYKLKESVQSDIRQAAVWNTLGVILLQSGRLQSAISVFSTLLVAAPDNYDCLGNLGIAYLQSGNWDLSERYFQDLILKDQNHPSALINYAALLLCKYGSVVAGAGASAVQSSVKDLASAVSTAKECLLTAVKGDPKAAHIWANLANAFNMSGDYRSSAKCLEKAAKLEPNCMATRYAVANHRIKDAERSQDPNEQLSWAGNEMASIIRDGDSATVERPIAWAGLAMVHKAQHEIAAAYETEKSELKEVEEHAICSLKQALAEDPNDAVQWNQMGLHSLCAQHLKTSQKYLKTAIARNRECSYSWSNLGVALHLSEDSSRAEEVYKQALEFATSENAHAIFSNLGNLYRQQKKYERAKAMFTKSLELQPGYAPAFNNLGLVFVAEGQLEEAKYCFDKAFQADPLLDLARSNLIKATAISKLYETGSPSTS* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00184 653 SUPERFAMILY TPR-like 474 626 IPR011990 GO:0005515
Pte3g00184 653 Gene3D Tetratricopeptide repeat domain 473 559 IPR011990 GO:0005515
Pte3g00184 653 ProSiteProfiles TPR repeat profile. 561 594 IPR019734 GO:0005515
Pte3g00184 653 Pfam Tetratricopeptide repeat 249 307 - -
Pte3g00184 653 ProSiteProfiles TPR repeat profile. 595 628 IPR019734 GO:0005515
Pte3g00184 653 SUPERFAMILY TPR-like 145 397 IPR011990 GO:0005515
Pte3g00184 653 Gene3D Tetratricopeptide repeat domain 336 470 IPR011990 GO:0005515
Pte3g00184 653 ProSiteProfiles TPR repeat profile. 239 272 IPR019734 GO:0005515
Pte3g00184 653 SMART tpr_5 239 272 IPR019734 GO:0005515
Pte3g00184 653 SMART tpr_5 525 558 IPR019734 GO:0005515
Pte3g00184 653 SMART tpr_5 148 181 IPR019734 GO:0005515
Pte3g00184 653 SMART tpr_5 491 524 IPR019734 GO:0005515
Pte3g00184 653 SMART tpr_5 561 594 IPR019734 GO:0005515
Pte3g00184 653 SMART tpr_5 595 628 IPR019734 GO:0005515
Pte3g00184 653 SMART tpr_5 273 306 IPR019734 GO:0005515
Pte3g00184 653 SMART tpr_5 362 395 IPR019734 GO:0005515
Pte3g00184 653 ProSiteProfiles TPR repeat region circular profile. 595 626 - -
Pte3g00184 653 MobiDBLite consensus disorder prediction 51 68 - -
Pte3g00184 653 Gene3D Tetratricopeptide repeat domain 560 638 IPR011990 GO:0005515
Pte3g00184 653 ProSiteProfiles TPR repeat region circular profile. 561 592 - -
Pte3g00184 653 ProSiteProfiles TPR repeat profile. 362 395 IPR019734 GO:0005515
Pte3g00184 653 MobiDBLite consensus disorder prediction 1 68 - -
Pte3g00184 653 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 20 644 - -
Pte3g00184 653 ProSiteProfiles TPR repeat profile. 525 558 IPR019734 GO:0005515
Pte3g00184 653 Pfam Tetratricopeptide repeat 148 177 IPR019734 GO:0005515
Pte3g00184 653 Pfam Tetratricopeptide repeat 362 395 IPR019734 GO:0005515
Pte3g00184 653 Pfam Tetratricopeptide repeat 527 558 IPR019734 GO:0005515
Pte3g00184 653 MobiDBLite consensus disorder prediction 12 33 - -
Pte3g00184 653 Pfam Tetratricopeptide repeat 562 624 - -
Pte3g00184 653 Gene3D Tetratricopeptide repeat domain 128 320 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00184 Pte-Chr3 1729518 1734502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00184 476 627 Glycosyltransferase AT3G04240 27.742 1.04e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00184 - - qsa:O6P43_030786 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00184 3 1729518 1734502 Pte3g00184 3 1729518 1734502 RCT