Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00115 ATGGGCGTCTCTCTATTCAATCCAACTGGAGGTCCAAACGAAGCCGTCGACAACTATCTTAAGTTGCGTGGCTACAAAGGCCTCTTCTCTCAGATCGAGCTGTCTTTTTCTGCTTCAGGCCTGCGTGATCGGGATGTTCTCTCGAAGAGTGATCCAATGTTGGTTATCTACTCAAAAGGGAGGAATGGAGAACTTGAGGAGCTTGGCCGCACTGAAGTTTTTCTAAATTCAATGAATCCCACATGGATGTCTAAACATATTGTGACTTATCATTTTGAGATTGTACAGTTTTTGGTGTTTCGTGTTTATGATGTTGACACTCAGTTTCACAACGTAGATGTGAAGATGCTTAGACTGGATGAACAGCATTTTCTGGGTGAGGCGACTTGTGCAATATCTGAGATTGTAACAAAATCTGACCATTCGTTGAACTTAGATCTTGCAAATAGAGTTGAGGTTCCCAGAACAACCCGTTCTGAAAATTGGGGAAAGCTCAAAGTACATGCTGAGGAGTGTATCACCTCGAAAACTACAACAGAGATAATATTAAGGTGTTCAGATTTGGAAAACATGGATCTCTTCTCGAGAAGTGACCCTTTTCTGGTAATATCAAAAGTTGTGGAGGGTGGTGAACGTATTCCAGTCAGTAGAACAGAAGTTTTGAAGAATGACCTTAATCCAGTATGGAAGCCAGTATTTTTAAATAATCAACAAGTTGGAAGCAAGGACTCTCCATTTGTAATAGAGTGCTATAACTTCAATAGCAACGGAAAACATGATCTGTTGGGTAAGGTGCAAAAATCATTGGCTGACCTGGAGAGACTTCATATTGGTGGGCTGGGGCAGAACTTAATCCAGCCCACTGCTGCTGGGCATGGTTACCAGGAAAAGGTATTGAAGAGCCAGTTATTTGTGGATAAGTTTACTGAGACAGTCCAGTATACTTTTCTGGATTATTTGGCTGCAGGATTTGGGTTGAACTTCATGGTTGCTGTAGATTTCACTGCTTCAAATGGAAACCCACGGCTGCCTGATTCTTTACATTATCTTGATCCTACTGGAAGACCGAATGCTTACCAGAGAGCAATCGTGGAAGTTGGAGAAGTGTTACAATTTTATGATTCTGATAAGCGATTCCCTGCCTGGGGGTTTGGAGCACGCCCAATTGATGGTCCTGTCTCTCACTGTTTTAACTTAAATGGAAGCAGTCATTACTGTGAGGTTGAGGGGATCCAAGGAATTATGATGGCATATACTAGTGCACTCCTTAATGTTTCTCTAGCTGGACCAACTCTTTTTGGACCTGTGATAAGCTGTGCTTCTGCAATTGTCAGCCAGTCTCTTGCCAATGGTGCAAGAAAATATTTTGTTTTGTTGATTATCACCGATGGAGTGGTAACAGATCTGCAAGAAACCAGAGATGCTATCGTAAATGCGTCTGATCTTCCATTGTCAATACTCATCGTTGGAGTTGGCGGTGCAGACTTCAAAGAAATGGAGATTTTGGATGCTGACAAAGGAGAGAAACTTGAAAGTTCTTCGGGACGGGTTGCATCACGTGACATAGTCCAATTTATTCCATTTCGGGATGTTCAGAATGGAGAGATTTCGGTAGTTCAAGCTCTTTTAGCAGAACTACCAGCGCAGTTTTTGACCTACTTGCGCCACAGAAATATTCAACCGTACCCCTGA 1692 0.4243 MGVSLFNPTGGPNEAVDNYLKLRGYKGLFSQIELSFSASGLRDRDVLSKSDPMLVIYSKGRNGELEELGRTEVFLNSMNPTWMSKHIVTYHFEIVQFLVFRVYDVDTQFHNVDVKMLRLDEQHFLGEATCAISEIVTKSDHSLNLDLANRVEVPRTTRSENWGKLKVHAEECITSKTTTEIILRCSDLENMDLFSRSDPFLVISKVVEGGERIPVSRTEVLKNDLNPVWKPVFLNNQQVGSKDSPFVIECYNFNSNGKHDLLGKVQKSLADLERLHIGGLGQNLIQPTAAGHGYQEKVLKSQLFVDKFTETVQYTFLDYLAAGFGLNFMVAVDFTASNGNPRLPDSLHYLDPTGRPNAYQRAIVEVGEVLQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISCASAIVSQSLANGARKYFVLLIITDGVVTDLQETRDAIVNASDLPLSILIVGVGGADFKEMEILDADKGEKLESSSGRVASRDIVQFIPFRDVQNGEISVVQALLAELPAQFLTYLRHRNIQPYP* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00115 563 CDD C2B_Copine 180 272 IPR037768 -
Pte3g00115 563 CDD C2A_Copine 30 150 - -
Pte3g00115 563 PANTHER COPINE 23 562 IPR045052 GO:0005544
Pte3g00115 563 SUPERFAMILY vWA-like 326 508 IPR036465 -
Pte3g00115 563 ProSiteProfiles C2 domain profile. 8 145 IPR000008 -
Pte3g00115 563 Pfam Copine 346 561 IPR010734 -
Pte3g00115 563 FunFam Protein BONZAI 1 34 178 - -
Pte3g00115 563 ProSiteProfiles VWFA domain profile. 327 546 IPR002035 -
Pte3g00115 563 SMART VWA_4 325 522 IPR002035 -
Pte3g00115 563 Pfam C2 domain 37 140 IPR000008 -
Pte3g00115 563 Pfam C2 domain 182 273 IPR000008 -
Pte3g00115 563 CDD vWA_copine_like 297 550 IPR010734 -
Pte3g00115 563 Gene3D C2 domain 178 291 IPR035892 -
Pte3g00115 563 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 182 273 IPR035892 -
Pte3g00115 563 SMART C2_3c 31 144 IPR000008 -
Pte3g00115 563 SMART C2_3c 182 281 IPR000008 -
Pte3g00115 563 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 152 IPR035892 -
Pte3g00115 563 Gene3D C2 domain 35 177 IPR035892 -
Pte3g00115 563 ProSiteProfiles C2 domain profile. 161 284 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00115 Pte-Chr3 1112847 1118650 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00115 - - qsa:O6P43_030651 919.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00115 3 1112847 1118650 Pte3g00115 3 1112847 1118650 RCT