Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00060 ATGCATGCGGAAAATTATCTCTGCAGGCCAAATTTTGTGAATAAGTGGATATCGGATGGTTCAGATCCTCGGTACAATTCGAACTTAGATGTGGATTGGGATGACATTTTGCTAGTTACTGAAAACCTGCTTGACAATAATAAAGATTACTTAGGAATTGGCCTTCTAAACTTCAACAAGGGTGAGATTGATCGTTGGGAAGAGCTTACTCCTGATGCCACACATGTTATTTTGCACCTGGAGTATGTAGCATCAAATGTGACTTGGGAGTCACTTTATCCAGAATGGATTGATGAAGAAGAAGAATCTGGAGTACCCGTATGCCCGTCTCTACCAAAGCCGACATTTCCCGGCAAGAGACTTGATCTCATTGCTGTCAAGCTTCCTTGTCGGAATGAGGGGAATTGGTCCAGAGATGTGGCTCGGTTGCATCTGCATCTTGCAGCAGCTGCCCTTGCATCCTCTTCCAAGAGCAACTATCCTGTACATGTGCTTTTCATTTCCAATTGCTTCCCAATACCAAATCTGTTCACATGCAGAGATCTTTGGGCGCATCGAAGAAATGTATGGCTCTACAGACCAAACTTGCTTGTCTTAAGAGAAAAACTCCAGCTTCCTGTTGGATCTTGTGAACTCGCAGTTCCACTTAGGAGCAAAGAGCTGATTTACACAGGAAATGTTCACCGTGAAGCATATGCCACAATTCTTCACTCAGCTCATGTTTATGTATGCGGAGCCATTGCTGCTGCACGGAGCATTCGCATGTCTGGTTCGACCCGTGACCTTGTGATACTTGTCGATGAGACCATAGGAGAATACCATAGAAGCGGACTAGAGGCAGCTGGGTGGAAAGTTAGGACAATCAAAAAAATTAGAAATCCTAAAGCTGAAAAAGATGCGTACAACGAATATAACTACAGCAAGTTCAGACTGTGGCAGCTTACGGATTATGATAAGATAATATTCATTGACGCTGATCTTATTATTCTGAGGAACATAGACTTCTTATTTGGAATTTATGAGATCTCTGCTACAGGAAACAATGGCACACTTTTCAACTCTGGGGTCATGGTGATTGAACCTTCAAACTGCACATTCCAGCTTCTGATGGATCATATTAATGAGATTGAGTCCTACAATGGTGGGGACCAAGGATATCTGAATGAAATATTTACATGGTGGCATAGGATTCCAAGGCACATGAACTTTCTGAAACATTTTTGGGTAGGTGATGAGGAAGAGAAGAAGATAATGAAGACTAGGCTGTTTGGAGCTGAGCCTCCAGTTCTGTATGTTCTTCATTACCTGGGAATGAAACCATGGCTATGTTTCAGAGACTATGACTGCAACTGGAATTCAGATATTTTTCATGAATTTGCAAGTGATATTGCTCATGCAAGATGGTGGAAAGTGCATGATGCCATGCCTGAGATGTTGCAGCAATTCTGCCTTCTGAGATCAAAGCAGAAAGCACAATTGGAATGGGACCGTAGGGAAGCTGAGAAGGCAAACTTCACAGATGGGCATTGGAGAATAAAAGTGAAAGATCGCCGCTTGAGGAAATGCATTGATAATGTGTGCTCATGGAAGAGCATGTTAAGGCACTGGGGTGAGACAAATTGGACTGATGCTGAGTTCTTCACTCCAACCCCGCCTACTATTGCTATCAAAACATCATCTCTTTCAGGGTGTTGCTGA 1698 0.4293 MHAENYLCRPNFVNKWISDGSDPRYNSNLDVDWDDILLVTENLLDNNKDYLGIGLLNFNKGEIDRWEELTPDATHVILHLEYVASNVTWESLYPEWIDEEEESGVPVCPSLPKPTFPGKRLDLIAVKLPCRNEGNWSRDVARLHLHLAAAALASSSKSNYPVHVLFISNCFPIPNLFTCRDLWAHRRNVWLYRPNLLVLREKLQLPVGSCELAVPLRSKELIYTGNVHREAYATILHSAHVYVCGAIAAARSIRMSGSTRDLVILVDETIGEYHRSGLEAAGWKVRTIKKIRNPKAEKDAYNEYNYSKFRLWQLTDYDKIIFIDADLIILRNIDFLFGIYEISATGNNGTLFNSGVMVIEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWVGDEEEKKIMKTRLFGAEPPVLYVLHYLGMKPWLCFRDYDCNWNSDIFHEFASDIAHARWWKVHDAMPEMLQQFCLLRSKQKAQLEWDRREAEKANFTDGHWRIKVKDRRLRKCIDNVCSWKSMLRHWGETNWTDAEFFTPTPPTIAIKTSSLSGCC* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00060 565 CDD GT8_Glycogenin 230 475 - -
Pte3g00060 565 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 227 478 IPR029044 -
Pte3g00060 565 Pfam Glycosyl transferase family 8 236 442 IPR002495 GO:0016757
Pte3g00060 565 PANTHER GLYCOGENIN SUBFAMILY MEMBER 138 522 - -
Pte3g00060 565 SUPERFAMILY Nucleotide-diphospho-sugar transferases 230 476 IPR029044 -
Pte3g00060 565 FunFam Hexosyltransferase 227 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00060 Pte-Chr3 740476 742859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00060 21 563 Glycosyltransferase AT3G18660 71.091 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00060 K20890 - qsa:O6P43_030351 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00060 3 740476 742859 Pte3g00060 3 740476 742859 RCT
Pte2g02603 2 45089810 45091120 Pte3g00060 3 740476 742859 RCT