Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00056 ATGCCGAGCTCTAATGAAGGAGGGCCTGATGTATTCTTTGACTCAGTGGATTGTTTGCCATCAGAACAGCCATTTTTAGCAAAAGTGGAGTTAGGGTATGACAAATTTGAGTATAATATTTGGATGAATGAGCCTCAAAGTGTCAGTGAAAGACGTGAGGGGTTTTTAAGAATGATGGATTTGGCTGAGTTTTCTTCTTCCTCGAAGGATTGTAGTACACAACGGGAGGTGAAGATGACAAAAGGATCGGAGAGATTGGCAGTCTGCACTAGACAGGTATCTGGTACTCTTACCGATCCTAGTGATAATGCCAATGAAAGCCCGGCTAATTGTAGTGGACAAGCAACTCTTGAAGCTAAAATACTAGCTGATGAGTCTAGAAGACGTCGAGAAGATAAAGCAGATGTAGCTTCTCGACCAGAGGTACATGAACCTTCGTCCTATACTCCAGAAGATAGACACAGAGATGCTGAGGTTCATGAACAATGTCGGAATTTTCACTTGAGTGAGAGGAAAGTGAAGAAATGGTTTAAACACTTGTTGAGCAAAAACAACAAAAGTGGCCCTGGCATGGTTAAATCAGTGTTAGCGAGACCAAAATTAACAAACCAAATAAAAGTGAAACGGCACAAGAAAAGGTGGATGGAATTTACTGGAGTTTACACGGGGCAGGAGATAAGAGCTCACAAAGGCTTGATATGGACAATGAAGTTTAGTCCGGATGGCCAATACTTAGCGAGTGGTGGAGAAGATGGGGTTGTTCGGTTATGGCGAGTTACTTCATTGGATACATCACGCAATTTTTCTAGTGCGGTATATAAACGTGTCCATAATGTGAAGAATAACTTGTTTTCTTCCTTGAGAAAAGCGTCAAACCATAGTTCAATTCTGCTTCCTAAGAAGGTCTTTTACATTGAAGAAACTCCAATTCAAGAATTCTATGGCCATTCAAGTGGGATCTTGGACTTGGCTTGGTCACACTCAAACCTTCTTCTTTCTTCTTCCAAGGACAAGACTGTTCGCCTATGGCAAGTTGGTTACGATCCATGTCTAAATGTCTTTCGTCACAAAGACTATGTGACATGCATTCAGTTCAATCCTGTTGATGAAAATCACTTCATTAGTGGATCTTTAGATGGAAAAGTTCGAATATGGGGTGTATCTGAAAAGCGAGTAGTTGACTGGGCAGATATTGGAGATGGGATAACTGCTATATGTTACCAGCCGAAGGGGAACGGGTTTGTAGTTGGTTCCCTTACAGGAAGTTGCAGATTTTTTGCTGCATCAGGCAAACAAATCCAGCTGGAAAGCCAGATATATGTGCAGGGGAAGAAGAAAATGGTTGGTAACATGGTAACTGGCATTCAGTTTTCAGTGGAGAAATGTCAGAGAGCAATGGTAACATCAGAAGATTCCAAAATTCGTGTATTTGATGGAACGAATGTTCACTGCAAATACAAAGGTCTTGCTAAGTCAGGAAGTCAGACGTCTGCTTCATGGACATCAACAGGAAAACACATAGTTTCTGTTGGGGAGGACTCTCATGTTTACATCTGGAACCTCGGTGACCGCTCATCAAGAAAGAAAAACAAGTCAGTTCGTTCCTGCGAATACTTCTTTTGTGAAGGTTCAACTGTGGCTCTTCCTTGGTCTTGTATGAGCAAAGAAATAATCCACCATCAGTGTCACGGGATAAGAGATTCAGAAAGATTCTCTCTAAGCAATTCGTTTTCCATGGATGGTCGAGGCTCTATGACATGGCCTGAAGAGAAACTTCCCATTTATGATACGGGAGAGCGTGATGAAGTTCATCCACAGAGGCATCACTTGCATAGTGACATTTATGACTGGACATCTTTATGTGAAACATGGGGTTTTGTTATTGTGACTGCCGATTCCAATGGGACCATCAAGACATTCCACAACTTTGGATTTCCCATTAAACTTTAG 1950 0.4174 MPSSNEGGPDVFFDSVDCLPSEQPFLAKVELGYDKFEYNIWMNEPQSVSERREGFLRMMDLAEFSSSSKDCSTQREVKMTKGSERLAVCTRQVSGTLTDPSDNANESPANCSGQATLEAKILADESRRRREDKADVASRPEVHEPSSYTPEDRHRDAEVHEQCRNFHLSERKVKKWFKHLLSKNNKSGPGMVKSVLARPKLTNQIKVKRHKKRWMEFTGVYTGQEIRAHKGLIWTMKFSPDGQYLASGGEDGVVRLWRVTSLDTSRNFSSAVYKRVHNVKNNLFSSLRKASNHSSILLPKKVFYIEETPIQEFYGHSSGILDLAWSHSNLLLSSSKDKTVRLWQVGYDPCLNVFRHKDYVTCIQFNPVDENHFISGSLDGKVRIWGVSEKRVVDWADIGDGITAICYQPKGNGFVVGSLTGSCRFFAASGKQIQLESQIYVQGKKKMVGNMVTGIQFSVEKCQRAMVTSEDSKIRVFDGTNVHCKYKGLAKSGSQTSASWTSTGKHIVSVGEDSHVYIWNLGDRSSRKKNKSVRSCEYFFCEGSTVALPWSCMSKEIIHHQCHGIRDSERFSLSNSFSMDGRGSMTWPEEKLPIYDTGERDEVHPQRHHLHSDIYDWTSLCETWGFVIVTADSNGTIKTFHNFGFPIKL* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00056 649 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Pte3g00056 649 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Pte3g00056 649 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Pte3g00056 649 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 395 IPR001680 GO:0005515
Pte3g00056 649 ProSitePatterns Trp-Asp (WD) repeats signature. 507 521 IPR019775 -
Pte3g00056 649 PANTHER WD REPEAT DOMAIN 44 9 646 IPR040324 -
Pte3g00056 649 SMART WD40_4 388 427 IPR001680 GO:0005515
Pte3g00056 649 SMART WD40_4 219 258 IPR001680 GO:0005515
Pte3g00056 649 SMART WD40_4 347 386 IPR001680 GO:0005515
Pte3g00056 649 SMART WD40_4 481 520 IPR001680 GO:0005515
Pte3g00056 649 SMART WD40_4 306 344 IPR001680 GO:0005515
Pte3g00056 649 SMART WD40_4 442 478 IPR001680 GO:0005515
Pte3g00056 649 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 261 - -
Pte3g00056 649 Gene3D - 49 350 IPR015943 GO:0005515
Pte3g00056 649 Pfam WD domain, G-beta repeat 308 343 IPR001680 GO:0005515
Pte3g00056 649 Pfam WD domain, G-beta repeat 225 257 IPR001680 GO:0005515
Pte3g00056 649 Pfam WD domain, G-beta repeat 350 385 IPR001680 GO:0005515
Pte3g00056 649 Gene3D - 351 645 IPR015943 GO:0005515
Pte3g00056 649 MobiDBLite consensus disorder prediction 95 158 - -
Pte3g00056 649 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Pte3g00056 649 ProSiteProfiles Trp-Asp (WD) repeats profile. 496 529 IPR001680 GO:0005515
Pte3g00056 649 MobiDBLite consensus disorder prediction 95 114 - -
Pte3g00056 649 SUPERFAMILY WD40 repeat-like 222 638 IPR036322 GO:0005515
Pte3g00056 649 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 345 IPR001680 GO:0005515
Pte3g00056 649 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 345 - -
Pte3g00056 649 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 385 - -
Pte3g00056 649 MobiDBLite consensus disorder prediction 121 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00056 Pte-Chr3 716556 721872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00056 207 398 Acyl Lipid Metabolism Gene Families AT3G18860 26.020 3.07e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00056 K20241 - qsa:O6P43_023350 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00056 3 716556 721872 Pte3g00056 3 716556 721872 RCT