Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02602 ATGCTTTTGGGTGTTAATGTATCAGGATTTCATCGCAAAGATGTTCTGGACCTGGAATGGTCTCCAGATGGCACATATCTGGTATCTGGATCAGTTGACAACTCCTGCATCATATGGGATATTAACAAGGGTTCTGTCCATCAGATTTTGGATGGCCATTTCCATTATGTTCAAGGGGTGGCATGGGATCCATTGGGAAAGTATGTGGCTTCTCTTAGTTCGGACAGAACATGTCGAGTGTATTTCAATAAGCCTCAAAAGGCAAGGGGAAATGAGAAAATGAATTACGTTTCTCAGCATGTTATTTCAAAGGCTGAGCATCTACCGACACAAGATTCTAAGTCTGCCAAGACTAGTCTCTTTCATGACGAGACACTTCCATCTTTTTTCAGAAGATTGGCATGGTCGCCAGATGGTTCCTTTTTGCTTGTGCCTGCAGGCTCTCACAAAATTTCCCCAGCATCACGATCTGTCAATGTGGCCTATATATTCTCAAGAAAGGATCTGTCTCGGCCTGCAATACAGATACCTAGTGGGGGCAAAGCTGTTGTAGCAGTTAGATTCTGCCCTATGACTTTCACCCTCCGTGGAACAAATTCAGGTGCATTATTTAAGCTCCCATATCGGGTTATTTTTGCTGTGGCAACTTTGAATTCACTGTACGTATATGACACTGAGAGCTGTGTACCAGTAGCTGTGTGGATTGGCCTGCATTATGCTGCGATTACAGATGTGACGTGGTCACCCAATGCTCGCTATCTGGCTCTGTCTTCTCAAGATGGCTACTGTACAGTGTTAGAATTTGAAAACGACGAACTTGGAACACCTGTCTCCTCCATTTCGGAAGATAGAAAATGGATAGAAAATGACAGCAAGAACCCTTTGCAATTAAGGGAAGGCAAGCAAGCTTTGGAGAATGATGTTAGTGTTTCACAGATTCCAGCACAAGACGCTCTCGTCGACGCAAGCGGAAGTTGTCAGGCAACTCCAAATGCAGTGAATAGCGGTGACCCTGGGGCGGACAGGAATGGGGAGATACGAGACACTAACTCAAAGACCAGGCCCATGTCAGATAAGCCAGCTAAGAGACGTATCACTCCTGTAGTAATTGACCCCTAA 1119 0.4504 MLLGVNVSGFHRKDVLDLEWSPDGTYLVSGSVDNSCIIWDINKGSVHQILDGHFHYVQGVAWDPLGKYVASLSSDRTCRVYFNKPQKARGNEKMNYVSQHVISKAEHLPTQDSKSAKTSLFHDETLPSFFRRLAWSPDGSFLLVPAGSHKISPASRSVNVAYIFSRKDLSRPAIQIPSGGKAVVAVRFCPMTFTLRGTNSGALFKLPYRVIFAVATLNSLYVYDTESCVPVAVWIGLHYAAITDVTWSPNARYLALSSQDGYCTVLEFENDELGTPVSSISEDRKWIENDSKNPLQLREGKQALENDVSVSQIPAQDALVDASGSCQATPNAVNSGDPGADRNGEIRDTNSKTRPMSDKPAKRRITPVVIDP* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02602 372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 8 45 - -
Pte2g02602 372 SUPERFAMILY WD40 repeat-like 10 266 IPR036322 GO:0005515
Pte2g02602 372 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 9 303 IPR045145 GO:0006335
Pte2g02602 372 MobiDBLite consensus disorder prediction 341 366 - -
Pte2g02602 372 ProSitePatterns Trp-Asp (WD) repeats signature. 27 41 IPR019775 -
Pte2g02602 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 81 IPR001680 GO:0005515
Pte2g02602 372 Gene3D - 110 325 IPR015943 GO:0005515
Pte2g02602 372 SMART WD40_4 1 40 IPR001680 GO:0005515
Pte2g02602 372 SMART WD40_4 43 82 IPR001680 GO:0005515
Pte2g02602 372 SMART WD40_4 227 267 IPR001680 GO:0005515
Pte2g02602 372 Gene3D - 5 98 IPR015943 GO:0005515
Pte2g02602 372 ProSiteProfiles Trp-Asp (WD) repeats profile. 8 49 IPR001680 GO:0005515
Pte2g02602 372 MobiDBLite consensus disorder prediction 323 372 - -
Pte2g02602 372 Pfam WD domain, G-beta repeat 11 40 IPR001680 GO:0005515
Pte2g02602 372 Pfam WD domain, G-beta repeat 48 81 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02602 11 81 Miscellaneous Gene Families AT5G08390 29.577 7.33e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02602 K10751 - jre:109021007 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02602 2 45086221 45088766 Pte2g02602 2 45086221 45088766 RCT