Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02355 ATGACCCTCGCGCCATCTCTCACCGCATGCAACCACTTATTGCTTCCATCCACACTCCTTAAACCCAATGATATAAGCTTTCACCAGTTCTGTCTCACGTCTAAACCTCGAAGCTTGTTCGTTAACGGAATCCGGAAATTATCCACCGGAACCTGGAGAATCAGAGGGAAGACCAAGGAATTGGTGTTTGTCAACCCATCGGTGACTGTTGAGGAAGGCAAGTACAGGTACGAGGTTCAATCCTTAATCGAAAGGCTCAGTAGTTTGCCTCCTAGAGGTAGCATAGCTCGGTGCCTGGAAGCCTCCAAGAACAAGCTATCGTTGAACGATTTTTCTCTGGTATTCAAGGAGTTCGCTCAGCACGGCGATTGGCAGCGCTGTCTGCGTCTTTTCAAGTATATGCAGCGACAAATATGGTGTAAGCCAAACGAACAAATTTACATTATAATGATTACTTTGTTGGGCCGTGAAGGTTTGCTCGACAAATGCCAAGAGATATTCGACGAAATGCCAAGCCAAGGTGTGCCACGGAGTGTATTTTCCTACACGGCGATAATCAATGCATATGGGCGGAATGGTAAATATGAAACAGCTCTTGAATTGGTAGATAAAATGAAAAAGGAGAGGATTTCTCCCAGCATATTAACATATAATACAGTTATTAATGCATGTGCAAGAGGTGGGTTAGATTGGGAAGGGTTGTTAGGACTATTTGCTGAAATGAGACACGAAGGGATACAACCTGATCTTGTTACATATAATATTCTGCTTTGCGCTTGTGCTAGTAGGGGTTTAGGCGATGGAGCTGAAAAAGTGTTTAGGACAATGAATGAGAGTGGGGTAGTTCCTGATATTAGCACGTACAGTTATCTGGTGGAGACATTTAGAAAACAGAATAAGCTTGAGAAGGTTTTAGAGCTTCTTAGGGAGATGGAATCAGGAGGCCACGCGCCTGATGTTACTTCATACAATGTTTTATTAGATGCATATGCTGAGTCAGGGTCAATTAAAGAGGCAACTGATGTCTTTAGGCAGATGCAGACTATTGGATGCACGCCAAATGCTGATACGTTTAGTATTCTGTTGAATCTCTACGGGAAGAATGGGAGATATGACGATGTTCGTGAGCTTTTCCTTGAGATGAAAGTGAGTAACACGGAGCCAGATGCAGTGACTTACAACATTCTCATACAAGTGTTTGGGGAGGGTGGATATTTCAAAGAAGTTGTTACTTTGTTTCATGATATGATGGAGGAGAACATTGAACCAAATATGGAAACTTTCGAGGGTTTGATATTTGCTTGCGGAAAGGGAGGCCTCCATGAAGATGCCAAGAAAATTTTATTTCATATGAATGAGAAAGGAATACTCCCGAGTTCAAGTGCATATACTGGAGTTATTGAAGCATATGGACATGCTGCATTGTATGAAGAGGCTTTTGTGGCATTTAACCGAATGAATGAATTAGGAAACAAGCCAACTGTTGAAACATACAATTCTTTGATTCTTGCATTTGCAAGGGGTGGACTGTATCGAGAATCTGAAGCAATATTAATGAGGATGGGTGAGTCTCGTGTACCACGGAATGTAGATACATTCAATGGATTAATTGAAGCTTTTAGACAAGGGGGTAGGTTTGAAGAAGCTATCAAGGCCTATGCTGCAATGGAAAATGCTAGATTTGATCCTAACGAACTAACTTTTGAGGCCGTCTTGAGTGTATACTGCTTCACAGGTCTTGTTAAAGAGGGAGAGGAGCAGTTTCAGGAAATTAAATCTTCTGGAATACTGCCCAGTGTCATGTGCTACTGCATGATGCTGGCTCTCTATGCAAAGAGTGAAAGGGTAAGTGATGCCTACAATTTGTTGGATGAGATGAGAACGAACAGGGTATCAGATGTCCATCAAGTAGTTGCTCAGATGATTACAGGGGATTATGATGATGAATCTAATTGGCAAATTGTTGAGTATATCTTTGACAAAATAAACTCTGAAGGATGTGCATTGGGAATGAGGTTTTGCAATACACTCTTAGAAGCACTTTGGTGGTTGGGACAGAAGGAAAGGGCTGCTAGAGTGCTTAATGAAGCATCAAAGCGAGGGCTCTTCCCTGAACTTTTCCGTAGAAGCAAACTTATATGGTCTGTTGATGTACACAGGATGTGGGAAGGTGGTGCCTGCACTGCAATTTCAGTTTGGCTAAACAATATGCAGGAGATGTTCCAGAATGGGGAGAATCTTCCTCAACTAGCAACAGTTGTTGTAATACGCGGTCGAATGGAGAAAAGTGCAGAGAACCAAGATTTTCCCATTGCGAAGGCAGCCTTCTCATTCTTGCAGGGTCATGTCTCGCCATCCTTTAGTTTTCCATCATGGAATAACGGTCGCATTGTCTGCCAACGAGCACAGCTGAAGCGATTTTTGTCTGGCACAAAATCCTCCTCAAATGGAATCAAAGATAAAATAATACCATTAACTAATTCTCCTTTGTCTGGAAGAGAAAAGTCTACTAAACGCCACGTACAGACTGTCTCAAATAATGTTGATACTAGAACAGGAAAAAATCGAAGGGTGGAGCTTCTAACAAGCACTGTTTAG 2598 0.4219 MTLAPSLTACNHLLLPSTLLKPNDISFHQFCLTSKPRSLFVNGIRKLSTGTWRIRGKTKELVFVNPSVTVEEGKYRYEVQSLIERLSSLPPRGSIARCLEASKNKLSLNDFSLVFKEFAQHGDWQRCLRLFKYMQRQIWCKPNEQIYIIMITLLGREGLLDKCQEIFDEMPSQGVPRSVFSYTAIINAYGRNGKYETALELVDKMKKERISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDLVTYNILLCACASRGLGDGAEKVFRTMNESGVVPDISTYSYLVETFRKQNKLEKVLELLREMESGGHAPDVTSYNVLLDAYAESGSIKEATDVFRQMQTIGCTPNADTFSILLNLYGKNGRYDDVRELFLEMKVSNTEPDAVTYNILIQVFGEGGYFKEVVTLFHDMMEENIEPNMETFEGLIFACGKGGLHEDAKKILFHMNEKGILPSSSAYTGVIEAYGHAALYEEAFVAFNRMNELGNKPTVETYNSLILAFARGGLYRESEAILMRMGESRVPRNVDTFNGLIEAFRQGGRFEEAIKAYAAMENARFDPNELTFEAVLSVYCFTGLVKEGEEQFQEIKSSGILPSVMCYCMMLALYAKSERVSDAYNLLDEMRTNRVSDVHQVVAQMITGDYDDESNWQIVEYIFDKINSEGCALGMRFCNTLLEALWWLGQKERAARVLNEASKRGLFPELFRRSKLIWSVDVHRMWEGGACTAISVWLNNMQEMFQNGENLPQLATVVVIRGRMEKSAENQDFPIAKAAFSFLQGHVSPSFSFPSWNNGRIVCQRAQLKRFLSGTKSSSNGIKDKIIPLTNSPLSGREKSTKRHVQTVSNNVDTRTGKNRRVELLTSTV* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 598 IPR002885 -
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Pte2g02355 865 Pfam Pentatricopeptide repeat domain 237 295 IPR002885 -
Pte2g02355 865 Pfam Pentatricopeptide repeat domain 527 575 IPR002885 -
Pte2g02355 865 Pfam Pentatricopeptide repeat domain 307 368 IPR002885 -
Pte2g02355 865 Pfam Pentatricopeptide repeat domain 166 224 IPR002885 -
Pte2g02355 865 Gene3D Tetratricopeptide repeat domain 83 229 IPR011990 GO:0005515
Pte2g02355 865 SUPERFAMILY TPR-like 329 553 IPR011990 GO:0005515
Pte2g02355 865 Gene3D Tetratricopeptide repeat domain 403 555 IPR011990 GO:0005515
Pte2g02355 865 MobiDBLite consensus disorder prediction 818 837 - -
Pte2g02355 865 Pfam PPR repeat 602 630 IPR002885 -
Pte2g02355 865 Pfam PPR repeat 115 136 IPR002885 -
Pte2g02355 865 Gene3D Tetratricopeptide repeat domain 230 312 IPR011990 GO:0005515
Pte2g02355 865 Gene3D Tetratricopeptide repeat domain 313 386 IPR011990 GO:0005515
Pte2g02355 865 Gene3D Tetratricopeptide repeat domain 556 633 IPR011990 GO:0005515
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Pte2g02355 865 Pfam PPR repeat family 388 435 IPR002885 -
Pte2g02355 865 Pfam PPR repeat family 458 507 IPR002885 -
Pte2g02355 865 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 81 419 - -
Pte2g02355 865 SMART SMR_2 713 802 IPR002625 -
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 599 633 IPR002885 -
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 248 IPR002885 -
Pte2g02355 865 ProSiteProfiles Smr domain profile. 716 805 IPR002625 -
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Pte2g02355 865 FunFam Pentatricopeptide repeat-containing protein At1g74850, chloroplastic 229 331 - -
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Pte2g02355 865 NCBIfam pentatricopeptide repeat 180 213 IPR002885 -
Pte2g02355 865 NCBIfam pentatricopeptide repeat 216 249 IPR002885 -
Pte2g02355 865 NCBIfam pentatricopeptide repeat 602 631 IPR002885 -
Pte2g02355 865 NCBIfam pentatricopeptide repeat 287 320 IPR002885 -
Pte2g02355 865 NCBIfam pentatricopeptide repeat 532 565 IPR002885 -
Pte2g02355 865 NCBIfam pentatricopeptide repeat 251 285 IPR002885 -
Pte2g02355 865 NCBIfam pentatricopeptide repeat 391 424 IPR002885 -
Pte2g02355 865 NCBIfam pentatricopeptide repeat 322 355 IPR002885 -
Pte2g02355 865 NCBIfam pentatricopeptide repeat 357 390 IPR002885 -
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Pte2g02355 865 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02355 301 725 Glycosyltransferase AT1G05670 22.506 2.82e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02355 - - qsa:O6P43_022769 1303.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02355 2 43150540 43155661 Pte2g02355 2 43150540 43155661 RCT