LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte2g00417	ATGGCGAGAAGGATGTGTTCTTCAATGCGTTCGGCTATTTTCATTGCATCTCTGGCTTTTGCCTTTTTCTATTCATCTCAAGTAGACGCATCTAAATCGTCTTTTGATGACAATTTCAGTATAATGTGGTCTGAAAACCATTTTACCACCTCTACAGATGGACAGATCTGGCACCTCTCCCTTGACAATGAAACAGGATGTGGGTTTCAAACAAAGCAACGCTACAGATTTGGCTGGTTTAGCATGAAGCTGAAGCTGGTAGGAGGTGACTCTGCTGGTGTAGTCACAGCTTATTACATGTGCTCCGAAAATGGAGCAGGTCCAGAAAGGGATGAGCTTGACTTTGAGTTTCTGGGAAACAGAACAGGACAACCTTACCTCATTCAGACAAATGTGTTCAAGAATGGAACTGGAAACCGTGAAATGAGGCACATGCTCTGGTTTGACCCCACGGAGGACTTCCATTCCTATTCCATACTATGGAACGACCACCAGATTGTGTTTTTTGTGGACCAAGTACCCATCAGGGTGTACAAGAACAATGGGGAACCAAACAATTTCTTCCCAAATGAGAAGCCGATGTACTTGTTTTCAAGCATATGGAATGCTGATGACTGGGCTACAAGGGGTGGCCTAGAGAAGACAGACTGGAAGAAAGCCCCATTTGTGTCATCCTACACAGATTTCAAAGTGGATGGGTGCCAATGGGAAGATCCTTACCCTGCATGTGTCTCAACCACAACAGACAGCTGGTGGGATCAGTATAGTGCTTGGCATCTGTCTGATGATCAGAAAAAGGACTATGCTTGGGTTCAAAGAAATCTTGTCATATATGATTATTGCAAGGATACAGAAAGATTTCCAACCTTGCCTTGGGAATGTTCATTGAGCCCATGGGATTGA	903	0.4419	MARRMCSSMRSAIFIASLAFAFFYSSQVDASKSSFDDNFSIMWSENHFTTSTDGQIWHLSLDNETGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDELDFEFLGNRTGQPYLIQTNVFKNGTGNREMRHMLWFDPTEDFHSYSILWNDHQIVFFVDQVPIRVYKNNGEPNNFFPNEKPMYLFSSIWNADDWATRGGLEKTDWKKAPFVSSYTDFKVDGCQWEDPYPACVSTTTDSWWDQYSAWHLSDDQKKDYAWVQRNLVIYDYCKDTERFPTLPWECSLSPWD*	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte2g00417	300	PRINTS	Glycosyl hydrolase family 16 signature	146	163	IPR008264	GO:0004553\|GO:0005975
	Pte2g00417	300	PRINTS	Glycosyl hydrolase family 16 signature	67	85	IPR008264	GO:0004553\|GO:0005975
	Pte2g00417	300	PRINTS	Glycosyl hydrolase family 16 signature	128	141	IPR008264	GO:0004553\|GO:0005975
	Pte2g00417	300	Gene3D	-	21	297	-	-
	Pte2g00417	300	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	17	226	IPR000757	GO:0004553\|GO:0005975
	Pte2g00417	300	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	247	294	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Pte2g00417	300	CDD	GH16_XET	30	294	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Pte2g00417	300	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	32	294	IPR044791	GO:0004553
	Pte2g00417	300	PIRSF	EndGlu_transf	1	299	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Pte2g00417	300	FunFam	Xyloglucan endotransglucosylase/hydrolase	22	296	-	-
	Pte2g00417	300	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	112	122	IPR008263	GO:0004553\|GO:0005975
	Pte2g00417	300	Pfam	Glycosyl hydrolases family 16	36	218	IPR000757	GO:0004553\|GO:0005975
	Pte2g00417	300	SUPERFAMILY	Concanavalin A-like lectins/glucanases	34	298	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte2g00417	Pte-Chr2	3213669	3215142	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte2g00417	1	294	Glycoside Hydrolase	AT5G13870	50.680	1.70e-100	295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte2g00417	K08235		-	gmx:100793766	556.214

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte2g00417	2	3213669	3215142	Pte2g00417	2	3213669	3215142	RCT