Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00276 ATGTCTGGACCTCTTGATAGGACCCTTAAAGTCGGTTTTGAAAAACCCGAGTACGAGACTTTAGAGGATGAGAGGAGGACAAGGCTTGGGTCTTTCAAGAAGAAGGCAATCAATGCCTCATCCAAATTTAGGAACTCCTTCACAAAGAAAGGTCGGAGGAACAGCAAGGTTATGTCTGTTGCTATTGAGGATAACATTGACGCTGAGGACTTGAAGGCAGTTGATGCATTCCGCCAGGCACTCATCTTGGACGAACTACTACCATCAAAACATGATGATCATCATATGATGCTAAGATTTTTAAGAGCAAGGAAATTTGATATGGAGAAGGCAAAGCAAATGTGGGCCGATATGCTGCAGTGGAGGAAAGAGTTTGGTGCTGACACCATTATGGAGGACTTTGACTTCAAGGAAATAGACGAAGTCCTGAAATACTATCCACAAGGGCATCATGGAGTTGACAAGGAAGGAAGACCTGTTTATGTTGAGAGGTTGGGACAAGTTGATGCCAACAAGCTGATGCAAGCTACAACCATTGACCGTTATGTTAAGTATCACGTACGAGAATTTGAGAGAACATTCGCTGTTAAGTTCCCTGCCTGTTCAATTGCAGCAAAGAAGCACATTGATCAGAGCACTTCTATTTTGGATGTGCAAGGAGTGGGACTCAAAAATTTCAACAAAGCTGCGAGAGACCTCATCCAGAGGCTCCAGAAGATTGACGGTGACAACTATCCTGAGTCACTTAACCGTATGTTCATCATCAATGCTGGCTCTGGATTTAGACTCCTGTGGAACACTGTTAAATCATTCTTAGATCCCAAGACTGTTGGGAAAATCCACGTTTTGGGTAACAAGTACCAAAGCAAGTTGCTTGAAATCATTGATGCCAGTGAGCTCCCTGAGTTTCTGGGTGGTACTTGCACCTGTGCAGACAAAGGAGGTTGCATGCGTTCTGACAAGGGACCGTGGAATGACGCAGACATTGTGAAGATGGTACAAAATGGAGAGGCCATGTGCACAAGGCCAACTTTGTCTGGCATTGAGGAGAAGACAATCCCTGAAGATGAAGCTGCTTCCCCTGTGACAAGTGCCAAACTCGCTTTTGCTACAGCAGAGGTAAGTTCCCTATCCTGGGTTTTAAGAACTTGTTTACGTATAGAAAAATATATATTCATGTATATGTATCTTTCTCTGTATCAGGTAACAAAGAAAGAGTGCAGCCAGCCACATGACAATTTTGTCCCAATGGTTGAAAAGCCTGTTGAAGCAACCTGGCCAAAAGCAGTACATCATGATAAATTTGCCCCTGTTAAAGCAGATTATTACCCTGTCGAAGTTCACAGGGCTCCTGAAGGATTTAGCAACAACTTTGTTGGTGGGGTCATGGCCTTCGTCATGGGAATTATAACTATGGTTCGCATGACAAGGAACATGCCAAGGAAACTTACTGAGGCAGCCTTGTATGGCAGCTCAGTTTACTATCATGATAACATGATGAAAGGACATCAGTTGCCAGCACCTGCCATTCCTAGCACTGACCACATGGAAATGTTGAAACGCATGGCCGAGTTGGAAGAGAAGGTAATGGTTTTGAGCGCTAAACCAACCATGCCACCTGAGAAAGAGGAAACGTTGAACAACGCCTTGAACCGTGTCAATTTTCTGGAACAAGAGCTTGCTTCAACCAAGAAGGCACTTGATGATGCCATTGCTAGGCAGGAGGAGCTCCAAGCTCACATTGACAAGAAGAAGAAGAAGAAGAAGTTTGTAAGAATTTCTGAGCTATGA 1791 0.4411 MSGPLDRTLKVGFEKPEYETLEDERRTRLGSFKKKAINASSKFRNSFTKKGRRNSKVMSVAIEDNIDAEDLKAVDAFRQALILDELLPSKHDDHHMMLRFLRARKFDMEKAKQMWADMLQWRKEFGADTIMEDFDFKEIDEVLKYYPQGHHGVDKEGRPVYVERLGQVDANKLMQATTIDRYVKYHVREFERTFAVKFPACSIAAKKHIDQSTSILDVQGVGLKNFNKAARDLIQRLQKIDGDNYPESLNRMFIINAGSGFRLLWNTVKSFLDPKTVGKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADKGGCMRSDKGPWNDADIVKMVQNGEAMCTRPTLSGIEEKTIPEDEAASPVTSAKLAFATAEVSSLSWVLRTCLRIEKYIFMYMYLSLYQVTKKECSQPHDNFVPMVEKPVEATWPKAVHHDKFAPVKADYYPVEVHRAPEGFSNNFVGGVMAFVMGIITMVRMTRNMPRKLTEAALYGSSVYYHDNMMKGHQLPAPAIPSTDHMEMLKRMAELEEKVMVLSAKPTMPPEKEETLNNALNRVNFLEQELASTKKALDDAIARQEELQAHIDKKKKKKKFVRISEL* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00276 596 Coils Coil 546 587 - -
Pte2g00276 596 Gene3D - 30 125 - -
Pte2g00276 596 Coils Coil 515 535 - -
Pte2g00276 596 CDD SEC14 139 307 IPR001251 -
Pte2g00276 596 PRINTS Cellular retinaldehyde-binding protein signature 96 118 - -
Pte2g00276 596 PRINTS Cellular retinaldehyde-binding protein signature 265 284 - -
Pte2g00276 596 PRINTS Cellular retinaldehyde-binding protein signature 298 307 - -
Pte2g00276 596 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 138 312 IPR001251 -
Pte2g00276 596 FunFam SEC14 cytosolic factor 126 338 - -
Pte2g00276 596 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 19 585 - -
Pte2g00276 596 Gene3D - 126 338 IPR036865 -
Pte2g00276 596 SUPERFAMILY CRAL/TRIO domain 138 334 IPR036865 -
Pte2g00276 596 SMART CRAL_TRIO_N_2 93 118 IPR011074 -
Pte2g00276 596 SMART sec14_4 138 309 IPR001251 -
Pte2g00276 596 Pfam CRAL/TRIO, N-terminal domain 90 117 IPR011074 -
Pte2g00276 596 SUPERFAMILY CRAL/TRIO N-terminal domain 64 134 IPR036273 -
Pte2g00276 596 Pfam CRAL/TRIO domain 144 306 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00276 Pte-Chr2 2219424 2222752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00276 99 303 Acyl Lipid Metabolism Gene Families AT5G47730 29.952 1.71e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00276 K26544 - cave:132186932 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g01384 3 12024662 12026787 Pte2g00276 2 2219424 2222752 RCT
Pte2g00276 2 2219424 2222752 Pte2g00276 2 2219424 2222752 RCT