Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02662 ATGGCCTTCGTCAAATTAATTACTAGAAGATTCAACCGCTCTCTCCGCTCATACTCACTCACATTCAGACTATGTTCCTCATCTTCTTCTTCGATTTCAGAGGCAGAGCTTCAAGATGAAACCTACAAAAATGAATCAATTGAAAGGACTTGCTTATCTCCAGAAGACACTTTTATTGCCGATCGGTTTCAGTCCCTAATCAAAGATCACTACCGCAAAAACCCTAACATTGACGACGCTCCGCCGGTTCCTAGTTTCACCATATCTGAGCTCTCCCGAGATTTTTCTGCGAAAACCGCGGTCAACGAAGTTTCACCTGCCATTGTCAGCTGTGTGATTGCGAAATGTGGTGGCGTCCGCCACGGTATCCCTTTCCTCCAAATCCTCGCTTTCTTCAACTGGGCCACCAGCCTGGAGGGGTTCTCTCAATCGCCTGAACCGTATAACAAGATGATTGACCTCGCCGGAAAGGTTAGAAAATTTGATATGGCATGGCATTTGATTGAGCTGATGAAAGCTCGCGATGTGAAGATCACCATCGACACCTTTGCTATCCTTGTAAGACGCTATGTGAGAGCTGGATTGGCTGCCGAAGCTGTACACGCTTTTAATCGAATGGAGGATTATGGCTGCAAACCTAATAAGGTTGTATTTTCGATTGTGATTGACAGTTTTAGTAAGAAGAGAAGAGCAAGTGATGCTCAGTCATTCTTTGATAGTTTGAAGCACAAGTTTGAGCCTGATGTCGTTGTGTATACCAGTTTGGTTCATGGGTGGTGTAGGGCTGCCAACATATCTGAGGCAGAGCGCGTGTTTAAGGAAATGAAGACGTCTGGCATTAAGCCTAATACACATACATACACCATTGTGATAGATGCCCTGTGTCGATGTGGACAGATTACACGTGCTCATGATGTTTTTGCAGAGATGATAGATGAAGGTTGTGCACCTAATTCGATCACATTCAATAATCTGATGCGGGTTCATGTGAAGGCTGGGCGGACTGAAAAGGTTTTGCAGGTTTATAATCAAATGAAGAAACTCGGTTGCCCTGCAGATACAATTACATATAATTTCCTAATAGAGACCCATTGTAGGGATGAAAATCCTGAGGAGGCTACCAAGGTGTTGGATTCTATGGTTAAGAAAGGGTGTAATCCCAATGCATCTTCTTTCAATCCAATATTTAGATGCATAGCGAAATTGCAAGATGTAAATGCTGCTCATCGGTTGTTTGCTAAAATGAAGGATTGGAACGGTCAGCCAAACACATTGACTTATAATTTACTGATGAAGATGTTTGTTGGATCAAAGTCTACTGATATGGTTCTCAAGATGAAGAAGGATATGGATGAGAATGGCGTTGAACCAAATGTTAATACATACAAGATTTTGGTGTCGATGTATTGTGCAATGGGACATTGGAACAATGGCTACAAGTTATTAAAGGAAATGATTGATGAAAAGTGCCTCAAACCAAGTCTGTCGAATTACGAGAATGTGCTGGAACAGTTGAGAGAGGCAGGGCAGTTGAAGAAGCACGAGGAGTTAGTTGAGAAGATGGTTGACAGGGGATTTGTCAACCGCCCACTATGA 1596 0.4286 MAFVKLITRRFNRSLRSYSLTFRLCSSSSSSISEAELQDETYKNESIERTCLSPEDTFIADRFQSLIKDHYRKNPNIDDAPPVPSFTISELSRDFSAKTAVNEVSPAIVSCVIAKCGGVRHGIPFLQILAFFNWATSLEGFSQSPEPYNKMIDLAGKVRKFDMAWHLIELMKARDVKITIDTFAILVRRYVRAGLAAEAVHAFNRMEDYGCKPNKVVFSIVIDSFSKKRRASDAQSFFDSLKHKFEPDVVVYTSLVHGWCRAANISEAERVFKEMKTSGIKPNTHTYTIVIDALCRCGQITRAHDVFAEMIDEGCAPNSITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCPADTITYNFLIETHCRDENPEEATKVLDSMVKKGCNPNASSFNPIFRCIAKLQDVNAAHRLFAKMKDWNGQPNTLTYNLLMKMFVGSKSTDMVLKMKKDMDENGVEPNVNTYKILVSMYCAMGHWNNGYKLLKEMIDEKCLKPSLSNYENVLEQLREAGQLKKHEELVEKMVDRGFVNRPL* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02662 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Pte1g02662 531 Gene3D Tetratricopeptide repeat domain 314 401 IPR011990 GO:0005515
Pte1g02662 531 Gene3D Tetratricopeptide repeat domain 97 232 IPR011990 GO:0005515
Pte1g02662 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Pte1g02662 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Pte1g02662 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Pte1g02662 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Pte1g02662 531 Pfam Pentatricopeptide repeat domain 168 225 IPR002885 -
Pte1g02662 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Pte1g02662 531 SUPERFAMILY TPR-like 226 388 IPR011990 GO:0005515
Pte1g02662 531 Gene3D Tetratricopeptide repeat domain 241 313 IPR011990 GO:0005515
Pte1g02662 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Pte1g02662 531 Pfam PPR repeat family 247 296 IPR002885 -
Pte1g02662 531 Pfam PPR repeat family 317 366 IPR002885 -
Pte1g02662 531 Pfam PPR repeat family 422 470 IPR002885 -
Pte1g02662 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Pte1g02662 531 NCBIfam pentatricopeptide repeat 461 491 IPR002885 -
Pte1g02662 531 NCBIfam pentatricopeptide repeat 148 179 IPR002885 -
Pte1g02662 531 NCBIfam pentatricopeptide repeat 320 353 IPR002885 -
Pte1g02662 531 NCBIfam pentatricopeptide repeat 182 214 IPR002885 -
Pte1g02662 531 NCBIfam pentatricopeptide repeat 250 284 IPR002885 -
Pte1g02662 531 NCBIfam pentatricopeptide repeat 426 459 IPR002885 -
Pte1g02662 531 NCBIfam pentatricopeptide repeat 355 389 IPR002885 -
Pte1g02662 531 NCBIfam pentatricopeptide repeat 285 318 IPR002885 -
Pte1g02662 531 Gene3D Tetratricopeptide repeat domain 402 529 IPR011990 GO:0005515
Pte1g02662 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Pte1g02662 531 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 218 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02662 Pte-Chr1 46807833 46809789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02662 138 526 Glycosyltransferase AT1G05670 25.647 1.08e-46 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02662 - - qsa:O6P43_016313 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02662 1 46807833 46809789 Pte1g02662 1 46807833 46809789 RCT