Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02478 ATGTTGGATCCGCACACTTTTGCATGGATCTTCGGTTCAGTGATTTGCTTCGTTGCGCTCTACTATCTGGTCTTGCCTTTCAAGAATCAGAGAGTTTCATTTGAGCACGCAAGTAACTACCTTGATAACAGCATAACGACTACAGCCGGAGAATGTCGATCTTCTGAAAGCAAAGCTAAAGACGTCGACATCATCATAGTCGGAGCTGGTGTCGCCGGCGCTGCACTTGCTCATACTCTCGGCAAGGATGGACGACGTGTGCATGTGATTGAAAGAGACCTAAGTGAGCCTGATCGAATTGTTGGAGAGTTGTTACAACCTGGAGGCTATCTTAAACTAGTTGAGCTGGGACTACAAGATTGCGTAGAAGATATAGATGCTCAACGAGTGTTTGGTTATGCTTTATTTAAAGATGGAAAAGATATTCGGCTTGCTTATCCCTTGGAAAAGTTTCATGCAGATGTCTCCGGGAGAAGCTTTCATAATGGCCGGTTCATTCAGAGGATGCGAGAGAAAGCTACTTCTCTTCTGAGTGTACGTTTGGAGCAAGGAACAGTTACCTCCTTGCTTGAAGAGAAAGGGGCAATCAGAGGCGTGAGATACAAGAATAAAGATGGCCTTGAATTGACAGCATATGCTCCTCTAACCATTGTTTGTGATGGCTGTTTTTCAAACTTGCGTCGTTCTCTGTGTAACCCCAAGGTTGACGTTCCCTCGTGTTTTGTTGGCTTGGTCCTCGAAAACTGTAACCTTCCATATGCGAATCATGGCCATGTTATATTGGCCGACCCTTCGCCAATCCTGTTCTACCCTATAAGTAGTACAGAGATTCGCTGTCTGGTTGATGTGCCTGGTCAGAAGGTTCCGTCTATATCAAATGGTGAAATGGAGAAGTATTTGAAAACTGTAGTCGCTCCCCAGATACCCCCGGAACTTTATGATGCCTTTGTTGCTGCTGTTGATAACGGTAACATAAGAACTATGCCAAACAAAAGCATGCCAGCTGCTCCTTATCCCACTCCCGGAGCCCTTCTGCTAGGAGATGCATTCAACATGCGTCATCCTCTAACTGGGGGAGGAATGACAGTAGCATTGTCAGATATAGTGGTACTTCGAGATCTTCTCAGCCCTTTGCGTGATCTTCATGATGCACCCACACTCTGCAGGTATCTGGAGTCCTTTTACACCTTGCGTAAGCCTGTGGCATCCACTATAAATACTTTAGCAGGAGCTCTGTATAAGGTCTTCTGTGCATCACCAGATCAAGCCAGGAAAGAGATGTGCCAAGCTTGCTTCGATTATTTAAGTCTTGGAGGATTCTTCTCAAAAGGACCAGTTTCGTTACTCTCAGGATTAAACCCACGACCGTTGAGCTTGGTTCTGCATTTCTTTGCTGTAGCGATATATGGTGTCGGTCGCTTATTGCTGCCCTTTCCTTCTCCTAAACGAATCTGGATAGGCGCTAGATTGATTTCTGGTGCTTCTGGAATTATCTTCCCAATAATTAAGGCCGAAGGAGTTCGCCAGATGTTCTTGCCAGCGATTGTCCCGTCATTCTACCGAGCTCCTTCAATTGAAGTCATAAATAAAAAGTGA 1596 0.4536 MLDPHTFAWIFGSVICFVALYYLVLPFKNQRVSFEHASNYLDNSITTTAGECRSSESKAKDVDIIIVGAGVAGAALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLVELGLQDCVEDIDAQRVFGYALFKDGKDIRLAYPLEKFHADVSGRSFHNGRFIQRMREKATSLLSVRLEQGTVTSLLEEKGAIRGVRYKNKDGLELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPYANHGHVILADPSPILFYPISSTEIRCLVDVPGQKVPSISNGEMEKYLKTVVAPQIPPELYDAFVAAVDNGNIRTMPNKSMPAAPYPTPGALLLGDAFNMRHPLTGGGMTVALSDIVVLRDLLSPLRDLHDAPTLCRYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMCQACFDYLSLGGFFSKGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGARLISGASGIIFPIIKAEGVRQMFLPAIVPSFYRAPSIEVINKK* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02478 531 Pfam NAD(P)-binding Rossmann-like domain 66 92 - -
Pte1g02478 531 PANTHER SQUALENE MONOOXYGENASE 24 523 IPR040125 GO:0004506|GO:0016126
Pte1g02478 531 SUPERFAMILY FAD/NAD(P)-binding domain 61 432 IPR036188 -
Pte1g02478 531 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 340 355 - -
Pte1g02478 531 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 355 371 - -
Pte1g02478 531 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 212 227 - -
Pte1g02478 531 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 63 85 - -
Pte1g02478 531 Pfam Squalene epoxidase 213 485 IPR013698 GO:0004506|GO:0016020|GO:0050660
Pte1g02478 531 FunFam Squalene monooxygenase 2 56 436 - -
Pte1g02478 531 Gene3D - 54 431 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02478 Pte-Chr1 45292086 45296086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02478 17 525 Miscellaneous Gene Families AT1G58440 76.712 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02478 K00511 - qsa:O6P43_015949 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02478 1 45292086 45296086 Pte1g02478 1 45292086 45296086 RCT