Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02288 ATGAATCCTGACAAGTTCACCCACAAAACCAATGAGGCCATCGCTGCTGCTCATGAACTGGCAATGGGTGCTGGTCATGCACAGTTTACGCCCCTTCACCTTGCAGTGGCTCTGATTACTGATCCTAACGGGGTTTTCTTCCAATCGATTTCAAATGCTGGTGGCGAAGAGGCTGCCCGTGCAGCTGAAAGAGTTTTCAGTCAGGCACTGAAGAAGCTACCATCTCAAACTCCTGCCCCAGACGAGATCCCTGCAAGTACAACCCTGATTAAAGTAATTAGGAGAGCACAAGCAGCACAGAAGTCTCGTGGGGATACTCATTTAGCTGTTGATCAGTTGATTCTTGGGTTGCTTGAAGATTCCCAGATTGGAGATTTGTTGAAAGAGGCTGGTCTTTCAACAGCAAGAGTGAAATCTGAGGTGGATAAGCTCCGAGGAAAGGAGGGGAAAAAGGTTGATAGTGCTTCTGGTGATACTACATTCCAAGCTCTTAAAACTTACGGGCGAGACCTTGTTGAGCAAGCAGGGAAGCTTGACCCTGTTATTGGAAGAGATGAAGAGATCAGAAGGGTGGTAAGGATTCTCTCTAGAAGGACAAAGAACAATCCAGTCTTGATTGGAGAGCCTGGAGTTGGTAAAACAGCTGTGGTGGAAGGTTTGGCACAGAGAATTGTAAGAGGGGATGTGCCCAGTAATCTTGCTGATGTGAGGCTTATTGCTTTAGATATGGGTGCGTTAGTTGCTGGAGCCAAGTATAGAGGAGAATTTGAGGAGCGGTTAAAGGCAGTATTGAAAGAAGTAGAGGAGGCTCAAGGCAAAGTGATTTTGTTCATTGATGAAATTCACCTTGTTCTGGGTGCTGGCAGAACCGAGGGTTCAATGGATGCTGCTAATCTCTTCAAGCCCATGCTTGCTCGAGGACAGCTTAGATGTATAGGTGCCACTACGTTAGAGGAGTACAGGAAATATGTGGAAAAGGATGCTGCATTTGAGAGAAGATTTCAACAGGTGTATGTGGCTGAGCCAAGTGTTTCTGATACAATCAACATCCTCCGTGGATTGAAAGAAAGATACGAAGGTCATCATGGTGTTCGGATACAGGACCGTGCTCTCGTGGTTGCTGCACAGCTATCAAGTCGATACATAACAGGGCGTCACCTCCCAGACAAAGCAATTGATTTGGTTGATGAGGCTTGTGCAAATGTTAGAGTTCAACTTGATAGTCAGCCCGAAGAGATTGACAACCTTGAAAGGAAGAGAATGCAATTGGAAATTGAGCTTCATGCACTCGAGAAAGAGAAGGATAAAGCTAGCAAAGCCCGCCTTGTTGAAGTAAGAGAAGAGCTCGATAATTTGCGAGACAAACTTCAACCCTTGATGATGAAATACAGAAAAGAAAAGGAAAGAATTGATGAATTACGCAATCTAAAACAGAAAAGGGAGGAACTCCTTATTGCATTACAAGAAGCTGAGCGGAGATATGATCTTGCAAGAGCAGCTGATTTGCGATATGGGGCAATTCAAGAGGTAGAAGCAGCAATACAGCGGCTCGAAGGGAACTCCGATGACAAGGATGACAATGTGATGTTGACTGAGACAGTTGGGCCTGAGCATATTGCTGAAGTCGTCAGCCGTTGGACTGGCATTCCTGTTACAAGGCTTGGTCAAAATGAGAAGGAAAGGTTGACCGGACTTGCTGAGAGATTGCACAAGAGGGTTGTAGGACAAGACCAAGCCGTTGATGCCGTTGCAGAGGCAGTTTTGAGGTCCAGAGCAGGGTTGGGGAGACCCCAGCAACCTACTGGCTCATTTTTGTTCTTGGGACCAACCGGTGTTGGCAAGACTGAACTTGCGAAGGCTTTGGCTGAGCAACTATTCGATGATGAAAATCTAATTGTTAGGATTGACATGTCCGAGTACATGGAGCAACACTCAGTTGCAAGATTGATCGGTGCTCCTCCAGGATATGTTGGTTATGAAGAAGGTGGGCAGCTAACAGAGGCCGTGAGGCGAAGACCTTATAGTGTAATATTGTTTGATGAAGTAGAGAAAGCTCATCCTACTGTGTTCAATACTCTCCTCCAAGTTTTAGATGATGGAAGGCTCACTGATGGCCAAGGTCGCACTGTGGACTTCAGGAACACTGTTGTTATCATGACTTCAAACCTTGGTGCTGAGCATCTTTTGTCTGGTTTAACGGCCAATATTTCAATGCAAGCTGCTAGAGAAGGTGTTATGATAGAGGTGAGAAAGCACTTCAGGCCAGAACTCTTAAATCGGCTCGATGAAATTGTGATATTTGATCCTCTATCACATGAGCAATTGAGGAAGGTTGCTAGATTGCAAATGAAGGACATCGCCACTCGTCTTGCAGAGAGAGGAGTTGCCTTGGCTGTGACCGATGCAGCTTTAGACTATGTACTTGCAGAAAGCTACGATCCTGTATATGGTGCCAGACCAATTAGGAGATGGCTGGAAAAGAAGGTAGTGACAGAGCTGTCAAGAATGCTTGTGAGGGAAGAGATTGATGAGAACTCAACGGTTTACATAGAAGCAGGGCCAAGTGGAAGCGGTCTGCAGTACCGTATAGAAAATAACGGAGGGTTGGTTAATGCAGCTACAGGTGAGAAATCTGAGGTTTTGATACAGATACCTAATGGCCCAAGAAATGTTGCTGCCCAAACAGTTAAGAAAATGAAGATCGAGGAAATTGATGATGATGATGAGATGCAAGAGTGA 2739 0.4556 MNPDKFTHKTNEAIAAAHELAMGAGHAQFTPLHLAVALITDPNGVFFQSISNAGGEEAARAAERVFSQALKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKSRGDTHLAVDQLILGLLEDSQIGDLLKEAGLSTARVKSEVDKLRGKEGKKVDSASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAQGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVSDTINILRGLKERYEGHHGVRIQDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVREELDNLRDKLQPLMMKYRKEKERIDELRNLKQKREELLIALQEAERRYDLARAADLRYGAIQEVEAAIQRLEGNSDDKDDNVMLTETVGPEHIAEVVSRWTGIPVTRLGQNEKERLTGLAERLHKRVVGQDQAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLIVRIDMSEYMEQHSVARLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEVEKAHPTVFNTLLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGAEHLLSGLTANISMQAAREGVMIEVRKHFRPELLNRLDEIVIFDPLSHEQLRKVARLQMKDIATRLAERGVALAVTDAALDYVLAESYDPVYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIEAGPSGSGLQYRIENNGGLVNAATGEKSEVLIQIPNGPRNVAAQTVKKMKIEEIDDDDEMQE* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02288 912 CDD RecA-like_ClpB_Hsp104-like 561 767 - -
Pte1g02288 912 SMART ClpB_D2_small_2 770 861 IPR019489 -
Pte1g02288 912 Pfam AAA lid domain 343 443 IPR041546 -
Pte1g02288 912 Pfam Clp amino terminal domain, pathogenicity island component 17 59 IPR004176 -
Pte1g02288 912 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Pte1g02288 912 SUPERFAMILY Double Clp-N motif 4 158 IPR036628 -
Pte1g02288 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 549 850 IPR027417 -
Pte1g02288 912 FunFam ATP-dependent chaperone ClpB 1 148 - -
Pte1g02288 912 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524
Pte1g02288 912 Pfam C-terminal, D2-small domain, of ClpB protein 770 850 IPR019489 -
Pte1g02288 912 Gene3D - 150 343 IPR027417 -
Pte1g02288 912 Coils Coil 253 273 - -
Pte1g02288 912 FunFam Chaperone clpB 1, putative 152 343 - -
Pte1g02288 912 Gene3D - 553 769 IPR027417 -
Pte1g02288 912 Pfam AAA domain (Cdc48 subfamily) 600 764 IPR003959 GO:0005524|GO:0016887
Pte1g02288 912 SMART AAA_5 199 344 IPR003593 GO:0016887
Pte1g02288 912 SMART AAA_5 600 742 IPR003593 GO:0016887
Pte1g02288 912 Gene3D - 344 547 IPR027417 -
Pte1g02288 912 Coils Coil 507 527 - -
Pte1g02288 912 Gene3D - 3 148 IPR036628 -
Pte1g02288 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 548 IPR027417 -
Pte1g02288 912 Coils Coil 406 500 - -
Pte1g02288 912 FunFam ATP-dependent chaperone ClpB 344 547 - -
Pte1g02288 912 Pfam ATPase family associated with various cellular activities (AAA) 204 317 IPR003959 GO:0005524|GO:0016887
Pte1g02288 912 FunFam ATP-dependent Clp protease subunit 553 768 - -
Pte1g02288 912 PANTHER ATP-DEPENDENT CLP PROTEASE 7 865 - -
Pte1g02288 912 Gene3D - 770 865 - -
Pte1g02288 912 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 678 696 IPR001270 GO:0005524
Pte1g02288 912 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 604 622 IPR001270 GO:0005524
Pte1g02288 912 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 711 725 IPR001270 GO:0005524
Pte1g02288 912 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 649 667 IPR001270 GO:0005524
Pte1g02288 912 CDD AAA 182 337 - -
Pte1g02288 912 ProSitePatterns Chaperonins clpA/B signature 2. 634 652 IPR028299 -
Pte1g02288 912 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02288 Pte-Chr1 43623467 43627657 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02288 K03695 - qsa:O6P43_002209 1565.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02288 1 43623467 43627657 Pte1g02288 1 43623467 43627657 RCT