Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02112 ATGCTGAGCTCTATTGAAACAGGACCTGATGTATTCTTTGATTCAGTGGATTGTTTTTCACCTGAACTGTCATTTGTCGAAAACACTGAGTTAGGGTCTAATAAAATCGAATATGATATTTGGATGAATGTGCCTCGAAGTGTCAAGGAAAGGCGTGCAAGTTTTCTAAGAGTGATGGGTTTGTCGGAGGATTCTTCTTCAATTTATACTCGGGAGACGAAAGAAGGTACCGGACTAGTCACCGACTATTGTACCAAGCTCAGCTATAATGCCTCTGAAAATCAGGCTACTTGTACTGGAAAAATGGCTCATGACACAAGCATTGTATACGAAAAATTTACGAGAGACGGCAATGAAGATAAATCGGATTTAGCTTCTCAACCTGTGGTTCATGAACCCTCCACTTGTGGTTCGGTGGAGAGACAAACTGATGCTGAGGTTCATGAAGATAGTCGAAGTTTTTATGTGAGCAAGAAAAAATGGAGGAGATGGTGGAAGCAATTTTTGAACAAAAAGCAGGGAGACATTGCCGCATCAGTGTTGGAAGGACCAACAGCTGATGCAAAGATGACAAGCAGGATCAAAGTGAAACGAAACAAAAAAAAGTTGAAGGAACTGACAGGGGTACATATGGGACAGGAGGTCAAAGCGCATAGGGGCTTAATATGGACAATGAAGTTTAGTCCTGATGGCCGGTACTTAGCAAGTGGAGGTGAAGATGGTGTTGTACGTATATGGCGAGTTTTATCATTGGATGCATCGAGCAAGTATTTTGCTGCTGCAGATTTTCTCAGTAATGTGAAAGAGGATATGCTTGTTTCCTTGAAAAAAAAGTCAAGCCATATACCTCTTGTCCTTCCTAAGAAGGTTTTTCGTATCGAAGAATTGCCAATCCAAGAATTCTATGGACATTTCAGTGGTGTCTTGGACTTGGCTTGGTCAGATTCAAATCTTATTCTTTCTGCTTCCAAGGATAAAACTGTTCGCCTATGGCAAGTTGGCTATGATAAATGCCTGAATGTCTTTCATCACAATGACTATGTGACATGCTTGCAGTTCAATCCTGTCGACGAAAATTACTTCATTAGTGGATCGTTGGACGGGAAAATTCGAATATGGGGCGTATCTGAGAAGCGAGTGGTTGATTGGGCTTATATTAGAGAAGGGATAACTGCTATAAGTTATCAGCCTGATGGAAATGGTTTCATGGTTGGTTCCCTCACTGGCTGTTGTCGGTTTTTCGATGCATCAGGCCAACATATCCAGCTGGGGGGGCAGGTGTATGTTCAGGGAAAGAAAAAAGCTTATGGAAACAGGATAACTGGCATTCAGTTTTCACGAAAGAACTTTCGGAGAGCCATTGTGGCATCAGAAGATTCGAAAATTCGTGTATTTGACGGAACTGATGTTCTTCGCAAATACAAAGGTCTTGTGAAGTCAGGAAGTCAGATGTCAGCCTCATGTACATCAACTGAGAAACACATCATTTCTGTTGGGGAGGACTCTCATGTTTACATGTGGAACCTCAGCGAATCAGATTCTTCTGTTCGTTCCTGTGAATACTTCTTTTCTGAAGGAGTGACTGTGGCTATCCCTTGGTCCAGTGTGAACAAAGAATGGACCCTCCATTCCTCAGAAATGCAACCGTGCTCCATAGAAGGCACCTTGATAAGAAATTCAGAAACTTTCTCATTGAGTAGCTGGTTTCCCATTGACGGCAGCTCATGTCGAGGCTCCATGACATGGCCTGAAGAGAGACTTCCTATTTATGATGTACCTGTCTTATCGGAAGATATGGATACGTGCGGTCATGATCGTCAACGTAAGCAGCCCTTGCTCCGTGACATCCATCGCTGGACGTCCTTTTCTGAAACTTGGGGACTGGTCATTGTGACTGCTGATATCAACGGAAGCATCAAAACATTCCATAACTTTGGACTTCCCGTCCACCCTCAAGACCTCAGCCATTTGTAG 1974 0.4301 MLSSIETGPDVFFDSVDCFSPELSFVENTELGSNKIEYDIWMNVPRSVKERRASFLRVMGLSEDSSSIYTRETKEGTGLVTDYCTKLSYNASENQATCTGKMAHDTSIVYEKFTRDGNEDKSDLASQPVVHEPSTCGSVERQTDAEVHEDSRSFYVSKKKWRRWWKQFLNKKQGDIAASVLEGPTADAKMTSRIKVKRNKKKLKELTGVHMGQEVKAHRGLIWTMKFSPDGRYLASGGEDGVVRIWRVLSLDASSKYFAAADFLSNVKEDMLVSLKKKSSHIPLVLPKKVFRIEELPIQEFYGHFSGVLDLAWSDSNLILSASKDKTVRLWQVGYDKCLNVFHHNDYVTCLQFNPVDENYFISGSLDGKIRIWGVSEKRVVDWAYIREGITAISYQPDGNGFMVGSLTGCCRFFDASGQHIQLGGQVYVQGKKKAYGNRITGIQFSRKNFRRAIVASEDSKIRVFDGTDVLRKYKGLVKSGSQMSASCTSTEKHIISVGEDSHVYMWNLSESDSSVRSCEYFFSEGVTVAIPWSSVNKEWTLHSSEMQPCSIEGTLIRNSETFSLSSWFPIDGSSCRGSMTWPEERLPIYDVPVLSEDMDTCGHDRQRKQPLLRDIHRWTSFSETWGLVIVTADINGSIKTFHNFGLPVHPQDLSHL* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02112 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 301 333 - -
Pte1g02112 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 341 373 - -
Pte1g02112 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 248 - -
Pte1g02112 657 PANTHER WD REPEAT DOMAIN 44 108 648 IPR040324 -
Pte1g02112 657 Pfam WD domain, G-beta repeat 297 331 IPR001680 GO:0005515
Pte1g02112 657 Pfam WD domain, G-beta repeat 337 373 IPR001680 GO:0005515
Pte1g02112 657 Pfam WD domain, G-beta repeat 214 246 IPR001680 GO:0005515
Pte1g02112 657 PRINTS G protein beta WD-40 repeat signature 361 375 IPR020472 -
Pte1g02112 657 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Pte1g02112 657 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Pte1g02112 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 256 IPR001680 GO:0005515
Pte1g02112 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 341 IPR001680 GO:0005515
Pte1g02112 657 Gene3D - 199 543 IPR015943 GO:0005515
Pte1g02112 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Pte1g02112 657 SMART WD40_4 294 332 IPR001680 GO:0005515
Pte1g02112 657 SMART WD40_4 335 374 IPR001680 GO:0005515
Pte1g02112 657 SMART WD40_4 208 247 IPR001680 GO:0005515
Pte1g02112 657 SMART WD40_4 376 415 IPR001680 GO:0005515
Pte1g02112 657 SMART WD40_4 426 466 IPR001680 GO:0005515
Pte1g02112 657 SMART WD40_4 467 508 IPR001680 GO:0005515
Pte1g02112 657 SUPERFAMILY WD40 repeat-like 212 512 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02112 Pte-Chr1 42298964 42303853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02112 213 470 Miscellaneous Gene Families AT5G08390 23.247 2.22e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02112 K20241 - qsa:O6P43_023350 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02112 1 42298964 42303853 Pte1g02112 1 42298964 42303853 RCT