Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02091 ATGGAATCGGAGAAAGTGTGTATCCATGGTGCCGTGCTGGGTAATCTTATTATCAGGCCATCATGGTGGTTTCTGTTTCTGCTGTTTGCTTTCTTAACTGTCATTTCTCTCCAGCTCTCGACCCGGACTGTTTTTCCCGAATGGATGATAATGGGTTCGAGGAAATTAGACCCGACAGATGATTCAGAGAGCTGTGTCGGATTCTTCCGGAGCTTACCGGCGAGAAAGGTCGAGATGTCGATCCATGATTTCGGCGGGATAGGGGACGGGAAGACTTCTAATACCGAAGCGTTTCGGAAGGCCACAAGGTACATGCAGCGTTTCGTTAACAGAGGTGGGTCCCAGCTCAACGTTCCAAAAGGGAAGTGGCTCACCGGTAGTTTCAATCTCACCAGCGATTTTACTCTCTTTCTTGAAGATGGCGCTGTCATTTTGGGCTCTCAGGAACCAAAGGAATGGCCCATTATAGAACCACTGCCCTCTTATGGGAGAGGAAGAGAGAGGCTAGGAGGAAGACATATTAGTCTTTTACATGGAAATGGCCTTCAAAATGTTGTCATTACAGGACAAAATGGGACAATTGATGGGCAAGGAAAAATGTGGTGGGATCTATGGTGGAACAGAACACTGGAACACACTAGAGGCCACCTTTTGGAACTGATAAACTCTCACAATGTTCTTATCACAAACCTAACCTTGCGGGATTCTCCCTTTTGGACCATTCATCCAGTTTACTGCAGTAATGTTGTGATCAAAGGCATGACTATTCTGGCTCCTCTTAATGCACCCAATACTGATGGTATAGACCCAGACTCGAGTACAGACGTATGTATAGAAGACTGTTATATAGAAAGTGGAGATGACCTTGTAGCTGTGAAGAGTGGCTGGGACCAGTATGGGATCAAAATGGCTCGTCCGAGCACAAACATTGTTGTGAGAAGAATCTCAGGCACTACCCCAACTTGCTCTGGGGTTGGAATAGGTAGTGAAATGTCTGGCGGCATCTCAAACATAACCATTGAAAATCTTCATGTTTGGAACTCAGCCGCTGGCGTGCGAATCAAATCAGACAAAGGTAGAGGAGGATACATAACTAATGTGACTATAAGAAATATAAGAATGGAGAGAGTTAAAATACCTATAAGGTTCAGCAGAGGTTCAAATGACCATCCTGATGAGAAATGGGATCCTAAAGCCATGCCTAAAGTGAAGGGCATCTATATAAGTAACGTAGTCAGTGTAAATACAACAAAAGCACCAGTTTTGGAGGGTGTAAAAGGTGCATCATTTGAAGGCATATACTTGAAAAATATTACTTTACTTGGCCTATCCTCTTCGGCTACATGGCATTGTGAGCATGTTTCTGGCATTGCCACTGGGGTGTCTCCCAAGTCGTGTCCTGAATTGCAGCAAAATGATGACACTTCTTTTCCACCCATCTGA 1443 0.447 MESEKVCIHGAVLGNLIIRPSWWFLFLLFAFLTVISLQLSTRTVFPEWMIMGSRKLDPTDDSESCVGFFRSLPARKVEMSIHDFGGIGDGKTSNTEAFRKATRYMQRFVNRGGSQLNVPKGKWLTGSFNLTSDFTLFLEDGAVILGSQEPKEWPIIEPLPSYGRGRERLGGRHISLLHGNGLQNVVITGQNGTIDGQGKMWWDLWWNRTLEHTRGHLLELINSHNVLITNLTLRDSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTDVCIEDCYIESGDDLVAVKSGWDQYGIKMARPSTNIVVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWNSAAGVRIKSDKGRGGYITNVTIRNIRMERVKIPIRFSRGSNDHPDEKWDPKAMPKVKGIYISNVVSVNTTKAPVLEGVKGASFEGIYLKNITLLGLSSSATWHCEHVSGIATGVSPKSCPELQQNDDTSFPPI* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02091 480 Pfam Glycosyl hydrolases family 28 174 455 IPR000743 GO:0004650|GO:0005975
Pte1g02091 480 SUPERFAMILY Pectin lyase-like 72 470 IPR011050 -
Pte1g02091 480 PANTHER PECTIN LYASE-RELATED 32 475 - -
Pte1g02091 480 SMART pbh1 307 329 IPR006626 -
Pte1g02091 480 SMART pbh1 246 272 IPR006626 -
Pte1g02091 480 SMART pbh1 335 356 IPR006626 -
Pte1g02091 480 SMART pbh1 273 305 IPR006626 -
Pte1g02091 480 SMART pbh1 403 437 IPR006626 -
Pte1g02091 480 SMART pbh1 364 385 IPR006626 -
Pte1g02091 480 Gene3D - 70 465 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02091 Pte-Chr1 42118091 42122497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g02091 1 471 Glycoside Hydrolase AT4G33440 68.644 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02091 - - vvi:100252291 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02091 1 42118091 42122497 Pte1g02091 1 42118091 42122497 RCT